EvolutionaryDynamicsMover.cc File Reference

Overwrites the boltzmann function in GenericMonteCarloMover to sample according to evolutionary dynamics instead. More...

#include <protocols/evolution/EvolutionaryDynamicsMover.hh>
#include <protocols/evolution/EvolutionaryDynamicsMoverCreator.hh>
#include <basic/datacache/DataMapObj.hh>
#include <basic/datacache/DataMap.hh>
#include <iostream>
#include <iterator>
#include <string>
#include <algorithm>
#include <basic/Tracer.hh>
#include <ObjexxFCL/format.hh>
#include <numeric/random/random.hh>
#include <utility/tag/Tag.hh>
#include <protocols/rosetta_scripts/ParsedProtocol.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverStatus.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <fstream>
#include <utility/io/izstream.hh>
#include <sstream>
#include <cmath>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <protocols/calc_taskop_filters/OperatorFilter.hh>
#include <protocols/filters/BasicFilters.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::evolution

Functions
static basic::Tracer	TR ("protocols.evolution.EvolutionaryDynamicsMover")
static basic::Tracer	TR_energies ("protocols.evolution.EvolutionaryDynamicsMover.individual_energies")

Detailed Description

Overwrites the boltzmann function in GenericMonteCarloMover to sample according to evolutionary dynamics instead.

Author

Christoffer Norn ( chnor.nosp@m.n@gm.nosp@m.ail.c.nosp@m.om )

Function Documentation

static basic::Tracer TR ( "protocols.evolution.EvolutionaryDynamicsMover"  )

static

static basic::Tracer TR_energies ( "protocols.evolution.EvolutionaryDynamicsMover.individual_energies"  )

static

Referenced by protocols::evolution::EvolutionaryDynamicsMover::boltzmann().