| _assignments(core::Size resi, core::Size resj) const | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| _assignments(core::Size resi, core::Size resj) | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| add(CrossPeakList const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| add(PeakAssignmentOP const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| add_all_atoms(ResonanceList const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| assignments(core::Size resi, core::Size resj) const | protocols::noesy_assign::PeakAssignmentResidueMap | |
| assignments(core::Size resi, core::Size resj) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| assignments(core::Size resi, core::Size resj, PeakAssignments &collector) const | protocols::noesy_assign::PeakAssignmentResidueMap | |
| AtomByResList typedef | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| AtomList typedef | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| atoms_ | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| BOGUS_ASSIGNMENTS | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| check_for_symmetric_peaks(CrossPeakList &, bool accumulate_symmetry) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| compute_Nk(PeakAssignment const &alpha_beta, core::id::NamedAtomID const &gamma_atom, bool connect_in_i, bool connect_in_j, bool sequential, PeakAssignments const &close_to_i_assignments, PeakAssignments const &close_to_j_assignments, core::Real longrange_peak_volume) const | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| fill_covalent_gammas(core::Size, std::map< core::id::NamedAtomID, bool > &collector) const | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| has(core::Size resi, core::Size resj) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| network_analysis(core::Size n_total_assignments) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| network_analysis2() | protocols::noesy_assign::PeakAssignmentResidueMap | |
| PeakAssignmentMap typedef | protocols::noesy_assign::PeakAssignmentResidueMap | |
| PeakAssignmentResidueMap() | protocols::noesy_assign::PeakAssignmentResidueMap | |
| PeakAssignments typedef | protocols::noesy_assign::PeakAssignmentResidueMap | |
| remove(PeakAssignment const &) | protocols::noesy_assign::PeakAssignmentResidueMap | |
| ResidueList typedef | protocols::noesy_assign::PeakAssignmentResidueMap | |
| residues_ | protocols::noesy_assign::PeakAssignmentResidueMap | private |
| total_residue() const | protocols::noesy_assign::PeakAssignmentResidueMap | inline |
| ~PeakAssignmentResidueMap() override | protocols::noesy_assign::PeakAssignmentResidueMap | |