#include <SS_Info2.hh>

Inheritance diagram for protocols::fldsgn::topology::SS_Base:

Public Types
typedef core::Size	Size

typedef core::Real	Real

typedef core::Vector	Vector

typedef protocols::fldsgn::topology::BB_Pos	BB_Pos

Public Member Functions
	SS_Base ()
	default constructor More...

	SS_Base (core::Size const &begin, core::Size const &end)
	value constructor More...

core::Size	begin () const
	value constructor More...

core::Size	end () const

core::Size	length () const

Vector	orient () const

Vector	Nend_orient () const

Vector	Cend_orient () const

Vector	Nend_pos () const

Vector	Cend_pos () const

Vector	mid_pos () const

bool	is_geometry_initialized () const

Protected Member Functions
void	orient (Vector const &v)
	set vector from Ca of Nterminal to Ca of Cterminal More...

void	Nend_orient (Vector const &v)
	set orient vector of N-terminal SS More...

void	Cend_orient (Vector const &v)
	set orient vector of C-terminal SS More...

void	Nend_pos (Vector const &v)
	set positional vector of N-terminal More...

void	Cend_pos (Vector const &v)
	set positional vector of C-terminal More...

void	mid_pos (Vector const &v)
	set positional vector of mid point More...

void	is_geometry_initialized (bool const v)
	set geometry is initialized or not More...

Private Attributes
core::Size	begin_
	data More...

core::Size	end_
	end residue of strand More...

bool	is_geometry_initialized_

Vector	orient_
	orient vector from Ca of Nterminal to Ca of Cterminal More...

Vector	Nend_orient_
	orient vector of Nterminal end More...

Vector	Cend_orient_
	orient vector of Cterminal end More...

Vector	Nend_pos_
	positional vector of N- and C- teriminals More...

Vector	Cend_pos_

Vector	mid_pos_
	positional vector of mid point More...

Member Typedef Documentation

typedef protocols::fldsgn::topology::BB_Pos protocols::fldsgn::topology::SS_Base::BB_Pos

typedef core::Real protocols::fldsgn::topology::SS_Base::Real

typedef core::Size protocols::fldsgn::topology::SS_Base::Size

typedef core::Vector protocols::fldsgn::topology::SS_Base::Vector

Constructor & Destructor Documentation

protocols::fldsgn::topology::SS_Base::SS_Base ( )

default constructor

References Cend_orient_, Cend_pos_, mid_pos_, Nend_orient_, Nend_pos_, and orient_.

protocols::fldsgn::topology::SS_Base::SS_Base	(	core::Size const &	begin,
		core::Size const &	end
	)

value constructor

References Cend_orient_, Cend_pos_, mid_pos_, Nend_orient_, Nend_pos_, and orient_.

Member Function Documentation

core::Size protocols::fldsgn::topology::SS_Base::begin ( ) const

inline

value constructor

References begin_.

Referenced by protocols::fldsgn::topology::HelixPairing::calc_geometry(), protocols::fldsgn::topology::Strand::calc_geometry(), protocols::fldsgn::topology::Helix::calc_geometry(), protocols::denovo_design::components::count_bulges(), protocols::fldsgn::topology::operator<<(), and protocols::fldsgn::topology::BetaAlphaBetaMotifSet::set_babmotifs().

Vector protocols::fldsgn::topology::SS_Base::Cend_orient ( ) const

inline

References Cend_orient_.

Referenced by protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::Cend_orient ( Vector const & v )

inlineprotected

set orient vector of C-terminal SS

References Cend_orient_.

Vector protocols::fldsgn::topology::SS_Base::Cend_pos ( ) const

inline

References Cend_pos_.

Referenced by protocols::fldsgn::topology::HelixPairing::calc_geometry(), protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::Cend_pos ( Vector const & v )

inlineprotected

set positional vector of C-terminal

References Cend_pos_.

core::Size protocols::fldsgn::topology::SS_Base::end ( ) const

inline

References end_.

Referenced by protocols::fldsgn::topology::Strand::calc_geometry(), protocols::fldsgn::topology::Helix::calc_geometry(), protocols::denovo_design::components::count_bulges(), protocols::fldsgn::topology::operator<<(), and protocols::fldsgn::topology::BetaAlphaBetaMotifSet::set_babmotifs().

bool protocols::fldsgn::topology::SS_Base::is_geometry_initialized ( ) const

inline

References is_geometry_initialized_.

Referenced by protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::is_geometry_initialized ( bool const v )

inlineprotected

set geometry is initialized or not

References is_geometry_initialized_.

core::Size protocols::fldsgn::topology::SS_Base::length ( ) const

inline

References begin_, and end_.

Referenced by protocols::denovo_design::components::StrandPairing::nobu_register_shift().

Vector protocols::fldsgn::topology::SS_Base::mid_pos ( ) const

inline

References mid_pos_.

Referenced by protocols::fldsgn::topology::HelixPairing::calc_geometry(), protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::mid_pos ( Vector const & v )

inlineprotected

set positional vector of mid point

References mid_pos_.

Vector protocols::fldsgn::topology::SS_Base::Nend_orient ( ) const

inline

References Nend_orient_.

Referenced by protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::Nend_orient ( Vector const & v )

inlineprotected

set orient vector of N-terminal SS

References Nend_orient_.

Vector protocols::fldsgn::topology::SS_Base::Nend_pos ( ) const

inline

References Nend_pos_.

Referenced by protocols::fldsgn::topology::HelixPairing::calc_geometry(), protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::Nend_pos ( Vector const & v )

inlineprotected

set positional vector of N-terminal

References Nend_pos_.

Vector protocols::fldsgn::topology::SS_Base::orient ( ) const

inline

References orient_.

Referenced by protocols::fldsgn::topology::HelixPairing::calc_geometry(), protocols::fldsgn::topology::HSSTriplet::calc_geometry(), protocols::fldsgn::topology::Strand::calc_geometry(), and protocols::fldsgn::topology::Helix::calc_geometry().

void protocols::fldsgn::topology::SS_Base::orient ( Vector const & v )

inlineprotected

set vector from Ca of Nterminal to Ca of Cterminal

References orient_.

Member Data Documentation

core::Size protocols::fldsgn::topology::SS_Base::begin_

private

data

begintial residue of strand

Referenced by begin(), and length().

Vector protocols::fldsgn::topology::SS_Base::Cend_orient_

private

orient vector of Cterminal end

Referenced by Cend_orient(), and SS_Base().

Vector protocols::fldsgn::topology::SS_Base::Cend_pos_

private

Referenced by Cend_pos(), and SS_Base().

core::Size protocols::fldsgn::topology::SS_Base::end_

private

end residue of strand

Referenced by end(), and length().

bool protocols::fldsgn::topology::SS_Base::is_geometry_initialized_

private

Referenced by is_geometry_initialized().

Vector protocols::fldsgn::topology::SS_Base::mid_pos_

private

positional vector of mid point

Referenced by mid_pos(), and SS_Base().

Vector protocols::fldsgn::topology::SS_Base::Nend_orient_

private

orient vector of Nterminal end

Referenced by Nend_orient(), and SS_Base().

Vector protocols::fldsgn::topology::SS_Base::Nend_pos_

private

positional vector of N- and C- teriminals

Referenced by Nend_pos(), and SS_Base().

Vector protocols::fldsgn::topology::SS_Base::orient_

private

orient vector from Ca of Nterminal to Ca of Cterminal

Referenced by orient(), and SS_Base().

The documentation for this class was generated from the following files:

src/protocols/fldsgn/topology/SS_Info2.hh
src/protocols/fldsgn/topology/SS_Info2.cc

Public Types

Public Member Functions

Protected Member Functions

Private Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation