| ::PoseToStructFileRepConverterTests class | core::io::pose_to_sfr::PoseToStructFileRepConverter | friend |
| add_atom_to_sfr(pose::Pose const &pose, conformation::Residue const &rsd, core::Size atom_index, bool use_pdb_info) const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| append_atom_info_to_sfr(core::pose::Pose const &pose, ResidueInformation const &res_info, core::conformation::Residue const &rsd, core::Size const atom_index, bool const use_pdb_info) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| append_atom_info_to_sfr(core::pose::Pose const &pose, ResidueInformation const &res_info, core::conformation::Residue const &rsd, core::Size const atom_index, bool const use_pdb_info, core::Size const new_atom_num, core::Size const new_tercount) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| append_residue_info_to_sfr(ResidueInformation const &res_info, core::conformation::Residue const &rsd) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| append_residue_to_sfr(pose::Pose const &pose, core::Size const resnum) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| append_residue_to_sfr(pose::Pose const &pose, core::Size const resnum, core::Size &new_atom_num, core::Size const new_tercount) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| atom_indices_ | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| atom_indices_initialized_ | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| determine_atom_indices(pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| generate_default_remarks(rcsb::ExperimentalTechnique const technique) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| generate_default_title_section(rcsb::ExperimentalTechnique const technique) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| generate_HELIXInformation(ResidueInformation const &start_info, ResidueInformation const &stop_info, core::Size const index, core::Size const length) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| generate_secondary_structure_informations(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| generate_SHEETInformation(ResidueInformation const &start_info, ResidueInformation const &stop_info, core::Size const index) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| get_chem_comp_type(core::conformation::Residue const &rsd) const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| get_connectivity_annotation_info(core::pose::Pose const &pose, utility::vector1< char > const &new_chainIDs, core::pose::PDBInfoOP const &fresh_pdb_info=nullptr) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| get_link_record(core::pose::Pose const &pose, core::Size ii, core::Size conn, utility::vector1< char > const &new_chainIDs, core::pose::PDBInfoOP const &fresh_pdb_info=nullptr) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| get_new_atom_serial_num() const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| get_new_chainIDs(pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| get_parametric_info(core::io::RemarksOP remarks, core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| get_residue_information(core::pose::Pose const &pose, core::uint const seqpos, bool const use_PDB, bool const renumber_chains, utility::vector1< char > const &new_chainIDs, core::Size const new_tercount, ResidueInformation &res_info) const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| get_residue_information(core::pose::Pose const &pose, core::uint const seqpos, bool const use_PDB, bool const renumber_chains, utility::vector1< char > const &new_chainIDs, core::Size const new_tercount, ResidueInformation &res_info, core::pose::PDBInfoOP &fresh_pdb_info) const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| get_ssbond_record(core::pose::Pose const &pose, core::Size ii, core::Size conn, core::pose::PDBInfoOP const &fresh_pdb_info=nullptr) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| grab_additional_pose_data(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| grab_conect_records_for_atom(core::pose::Pose const &pose, core::Size const res_index, core::Size const atom_index_in_rsd, core::io::AtomInformation &ai) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| grab_foldtree(core::pose::Pose const &pose, bool const output_foldtree) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| grab_membrane_info(core::pose::Pose const &pose, bool const normalize_to_thk) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| grab_pdb_comments(core::pose::Pose const &pose, bool const output_comments) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| grab_pdb_parents(core::pose::Pose const &pose, bool const output_parents) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| grab_pdbinfo_labels(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| grab_pose_cache_data(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| grab_pose_energies_table(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| grab_simple_metric_data(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| grab_torsion_records(core::pose::Pose const &pose, bool const output_torsions) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| init_from_pose(core::pose::Pose const &pose) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| init_from_pose(core::pose::Pose const &pose, StructFileRepOptions const &options) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| init_from_pose(core::pose::Pose const &pose, utility::vector1< core::Size > const &residue_indices) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| init_from_pose(core::pose::Pose const &pose, id::AtomID_Mask const &mask) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| init_from_pose(core::pose::Pose const &pose, id::AtomID_Mask const &mask, StructFileRepOptions const &options) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| new_sfr() | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| operator<<(std::ostream &os, StructFileRep const &) | core::io::pose_to_sfr::PoseToStructFileRepConverter | friend |
| options_ | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| PoseToStructFileRepConverter() | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| PoseToStructFileRepConverter(StructFileRepOptions const &options_in) | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| set_fold_tree_io(bool const setting) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| sfr() | core::io::pose_to_sfr::PoseToStructFileRepConverter | |
| sfr_ | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| total_sfr_atoms(StructFileRep const &sfr) const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| total_sfr_atoms(StructFileRep const &sfr, core::Size const chain_num) const | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| use_pdb_info_for_num(pose::Pose const &pose, Size resnum) | core::io::pose_to_sfr::PoseToStructFileRepConverter | private |
| ~PoseToStructFileRepConverter() override | core::io::pose_to_sfr::PoseToStructFileRepConverter | inline |
1.8.7