CreateSequenceMotifMover.cc File Reference

Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif. More...

#include <protocols/calc_taskop_movers/CreateSequenceMotifMover.hh>
#include <protocols/calc_taskop_movers/CreateSequenceMotifMoverCreator.hh>
#include <protocols/task_operations/SequenceMotifTaskOperation.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <core/pose/Pose.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/sequence/sequence_motif.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <core/pack/task/operation/OperateOnResidueSubset.hh>
#include <core/select/residue_selector/NeighborhoodResidueSelector.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <utility/tag/Tag.hh>
#include <basic/datacache/DataMap.hh>
#include <utility/string_util.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/rosetta_scripts/util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::calc_taskop_movers

Functions
static basic::Tracer	TR ("protocols.calc_taskop_movers.CreateSequenceMotifMover")
std::ostream &	protocols::calc_taskop_movers::operator<< (std::ostream &os, CreateSequenceMotifMover const &mover)
	private methods /// More...

Detailed Description

Create a sequence motif in a region of protein using the SequenceMotifTaskOperation. Uses psueo-regular expressions to define the motif.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

static basic::Tracer TR ( "protocols.calc_taskop_movers.CreateSequenceMotifMover"  )

static