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protocols::stepwise::modeler::StepWiseModeler Member List

This is the complete list of members for protocols::stepwise::modeler::StepWiseModeler, including all inherited members.

apply(core::pose::Pose &pose) overrideprotocols::stepwise::modeler::StepWiseModelervirtual
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::moves::Movervirtual
clone_modeler() const protocols::stepwise::modeler::StepWiseModelervirtual
create()protocols::moves::Movervirtual
cst_set_protocols::stepwise::modeler::StepWiseModelerprivate
do_minimizing(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
do_prepacking(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
do_sampling(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
do_stepwise_lores(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
figure_out_moving_res_list(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseModelerprivate
figure_out_moving_res_list_from_most_distal_res(core::pose::Pose const &pose, core::Size const moving_res)protocols::stepwise::modeler::StepWiseModelerprivate
figure_out_prepack_res_protocols::stepwise::modeler::StepWiseModelerprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::stepwise::modeler::StepWiseModelerinlinevirtual
get_native_pose() const protocols::moves::Mover
get_num_sampled()protocols::stepwise::modeler::StepWiseModelerinline
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
initialize(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
initialize_constraints(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
initialize_scorefunctions(core::pose::Pose const &pose)protocols::stepwise::modeler::StepWiseModelerprivate
initialize_working_parameters_and_root(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
input_streams_protocols::stepwise::modeler::StepWiseModelerprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
look_for_precompute_move(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
master_packer_protocols::stepwise::modeler::StepWiseModelerprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
moving_res_protocols::stepwise::modeler::StepWiseModelerprivate
moving_res_list_protocols::stepwise::modeler::StepWiseModelerprivate
name()protocols::moves::Moverinlinestatic
operator=(StepWiseModeler const &src)protocols::stepwise::modeler::StepWiseModeler
options()protocols::stepwise::modeler::StepWiseModelerinline
options_protocols::stepwise::modeler::StepWiseModelerprivate
pack_scorefxn_protocols::stepwise::modeler::StepWiseModelerprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
pose_list_protocols::stepwise::modeler::StepWiseModelerprivate
PoseCOP typedefprotocols::moves::Mover
precomputed_library_mover()protocols::stepwise::modeler::StepWiseModelerinline
precomputed_library_mover_protocols::stepwise::modeler::StepWiseModelerprivate
prepack_res_was_inputted_protocols::stepwise::modeler::StepWiseModelerprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
register_options()protocols::moves::Moverinlinestatic
reinitialize(core::pose::Pose &pose)protocols::stepwise::modeler::StepWiseModelerprivate
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
sample_scorefxn_protocols::stepwise::modeler::StepWiseModelerprivate
sampling_successful()protocols::stepwise::modeler::StepWiseModelerprivate
scorefxn()protocols::stepwise::modeler::StepWiseModelerinline
scorefxn_protocols::stepwise::modeler::StepWiseModelerprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_figure_out_prepack_res(bool const setting)protocols::stepwise::modeler::StepWiseModelerinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_input_streams(utility::vector1< protein::InputStreamWithResidueInfoOP > const &input_streams)protocols::stepwise::modeler::StepWiseModeler
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_moving_res_and_reset(core::Size const moving_res)protocols::stepwise::modeler::StepWiseModeler
set_moving_res_list(utility::vector1< core::Size > const &setting)protocols::stepwise::modeler::StepWiseModelerinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_options(options::StepWiseModelerOptionsCOP options)protocols::stepwise::modeler::StepWiseModelerinline
set_precomputed_library_mover(precomputed::PrecomputedLibraryMoverCOP precomputed_library_mover)protocols::stepwise::modeler::StepWiseModelerinline
set_type(std::string const &setting)protocols::moves::Moverinline
set_working_minimize_res(utility::vector1< core::Size > const &setting)protocols::stepwise::modeler::StepWiseModelerinline
set_working_parameters(working_parameters::StepWiseWorkingParametersCOP working_parameters)protocols::stepwise::modeler::StepWiseModeler
set_working_prepack_res(utility::vector1< core::Size > const &setting)protocols::stepwise::modeler::StepWiseModelerinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
StepWiseModeler(core::Size const moving_res, core::scoring::ScoreFunctionCOP scorefxn)protocols::stepwise::modeler::StepWiseModeler
StepWiseModeler(core::scoring::ScoreFunctionCOP scorefxn)protocols::stepwise::modeler::StepWiseModeler
StepWiseModeler(StepWiseModeler const &src)protocols::stepwise::modeler::StepWiseModeler
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
working_minimize_res_protocols::stepwise::modeler::StepWiseModelerprivate
working_parameters()protocols::stepwise::modeler::StepWiseModeler
working_parameters_protocols::stepwise::modeler::StepWiseModelerprivate
working_prepack_res_protocols::stepwise::modeler::StepWiseModelerprivate
~StepWiseModeler() overrideprotocols::stepwise::modeler::StepWiseModeler
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