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core::scoring::SigmoidWeightedCenList< T > Class Template Reference

Keep track of the cenlist information stores both centroid counts (T = Real) as well as d_centroid_counts (T = Vector) More...

#include <SmoothEnvPairPotential.hh>

Inheritance diagram for core::scoring::SigmoidWeightedCenList< T >:
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Public Member Functions

 SigmoidWeightedCenList ()
 
 SigmoidWeightedCenList (SigmoidWeightedCenList const &src)
 
basic::datacache::CacheableDataOP clone () const override
 
Size size () const
 
T fcen6 (Size const seqpos) const
 
T & fcen6 (Size const seqpos)
 
T fcen10 (Size const seqpos) const
 
T & fcen10 (Size const seqpos)
 
T fcen12 (Size const seqpos) const
 
T & fcen12 (Size const seqpos)
 
bool calculated () const
 
bool & calculated ()
 
void initialize (Size nres, T val)
 
void set_fcen6 (Size const seqpos, T value)
 
void set_fcen10 (Size const seqpos, T value)
 
void set_fcen12 (Size const seqpos, T value)
 

Private Attributes

utility::vector1< T > fcen6_
 
utility::vector1< T > fcen10_
 
utility::vector1< T > fcen12_
 
bool calculated_
 

Detailed Description

template<class T>
class core::scoring::SigmoidWeightedCenList< T >

Keep track of the cenlist information stores both centroid counts (T = Real) as well as d_centroid_counts (T = Vector)

Constructor & Destructor Documentation

template<class T>
core::scoring::SigmoidWeightedCenList< T >::SigmoidWeightedCenList ( )
inline
template<class T>
core::scoring::SigmoidWeightedCenList< T >::SigmoidWeightedCenList ( SigmoidWeightedCenList< T > const &  src)
inline

Member Function Documentation

template<class T>
bool core::scoring::SigmoidWeightedCenList< T >::calculated ( ) const
inline

References core::scoring::SigmoidWeightedCenList< T >::calculated_.

Referenced by core::scoring::CenRotEnvPairPotential::compute_centroid_environment(), core::scoring::SmoothEnvPairPotential::compute_centroid_environment(), core::scoring::CenRotEnvPairPotential::compute_dcentroid_environment(), core::scoring::SmoothEnvPairPotential::compute_dcentroid_environment(), core::scoring::CenRotEnvPairPotential::finalize(), and core::scoring::SmoothEnvPairPotential::finalize().

template<class T>
bool& core::scoring::SigmoidWeightedCenList< T >::calculated ( )
inline

References core::scoring::SigmoidWeightedCenList< T >::calculated_.

template<class T>
basic::datacache::CacheableDataOP core::scoring::SigmoidWeightedCenList< T >::clone ( ) const
inlineoverride
template<class T>
T core::scoring::SigmoidWeightedCenList< T >::fcen10 ( Size const  seqpos) const
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen10_.

Referenced by core::scoring::SmoothEnvPairPotential::compute_centroid_environment(), core::scoring::SmoothEnvPairPotential::compute_dcentroid_environment(), core::scoring::CenRotEnvPairPotential::evaluate_cen_rot_env_and_cbeta_deriv(), core::scoring::CenRotEnvPairPotential::evaluate_cen_rot_env_and_cbeta_score(), core::scoring::SmoothEnvPairPotential::evaluate_env_and_cbeta_deriv(), core::scoring::SmoothEnvPairPotential::evaluate_env_and_cbeta_scores(), core::scoring::CenRotEnvPairPotential::fill_smooth_cenlist(), and core::scoring::SmoothEnvPairPotential::fill_smooth_cenlist().

template<class T>
T& core::scoring::SigmoidWeightedCenList< T >::fcen10 ( Size const  seqpos)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen10_.

template<class T>
T core::scoring::SigmoidWeightedCenList< T >::fcen12 ( Size const  seqpos) const
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen12_.

Referenced by core::scoring::SmoothEnvPairPotential::compute_centroid_environment(), core::scoring::SmoothEnvPairPotential::compute_dcentroid_environment(), core::scoring::CenRotEnvPairPotential::evaluate_cen_rot_env_and_cbeta_deriv(), core::scoring::CenRotEnvPairPotential::evaluate_cen_rot_env_and_cbeta_score(), core::scoring::SmoothEnvPairPotential::evaluate_env_and_cbeta_deriv(), core::scoring::SmoothEnvPairPotential::evaluate_env_and_cbeta_scores(), core::scoring::CenRotEnvPairPotential::fill_smooth_cenlist(), and core::scoring::SmoothEnvPairPotential::fill_smooth_cenlist().

template<class T>
T& core::scoring::SigmoidWeightedCenList< T >::fcen12 ( Size const  seqpos)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen12_.

template<class T>
T core::scoring::SigmoidWeightedCenList< T >::fcen6 ( Size const  seqpos) const
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen6_.

Referenced by core::scoring::SmoothEnvPairPotential::compute_centroid_environment(), core::scoring::SmoothEnvPairPotential::compute_dcentroid_environment(), core::scoring::CenRotEnvPairPotential::evaluate_cen_rot_env_and_cbeta_deriv(), core::scoring::CenRotEnvPairPotential::evaluate_cen_rot_env_and_cbeta_score(), core::scoring::SmoothEnvPairPotential::evaluate_env_and_cbeta_deriv(), core::scoring::SmoothEnvPairPotential::evaluate_env_and_cbeta_scores(), core::scoring::CenRotEnvPairPotential::fill_smooth_cenlist(), and core::scoring::SmoothEnvPairPotential::fill_smooth_cenlist().

template<class T>
T& core::scoring::SigmoidWeightedCenList< T >::fcen6 ( Size const  seqpos)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen6_.

template<class T>
void core::scoring::SigmoidWeightedCenList< T >::initialize ( Size  nres,
T  val 
)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen10_, core::scoring::SigmoidWeightedCenList< T >::fcen12_, core::scoring::SigmoidWeightedCenList< T >::fcen6_, and protocols::hybridization::val.

Referenced by core::scoring::CenRotEnvPairPotential::compute_centroid_environment(), core::scoring::SmoothEnvPairPotential::compute_centroid_environment(), core::scoring::CenRotEnvPairPotential::compute_dcentroid_environment(), and core::scoring::SmoothEnvPairPotential::compute_dcentroid_environment().

template<class T>
void core::scoring::SigmoidWeightedCenList< T >::set_fcen10 ( Size const  seqpos,
T  value 
)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen10_.

template<class T>
void core::scoring::SigmoidWeightedCenList< T >::set_fcen12 ( Size const  seqpos,
T  value 
)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen12_.

template<class T>
void core::scoring::SigmoidWeightedCenList< T >::set_fcen6 ( Size const  seqpos,
T  value 
)
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen6_.

template<class T>
Size core::scoring::SigmoidWeightedCenList< T >::size ( ) const
inline

References core::scoring::SigmoidWeightedCenList< T >::fcen6_.

Member Data Documentation

template<class T>
bool core::scoring::SigmoidWeightedCenList< T >::calculated_
private

Referenced by core::scoring::SigmoidWeightedCenList< T >::calculated().

template<class T>
utility::vector1< T > core::scoring::SigmoidWeightedCenList< T >::fcen10_
private

Referenced by core::scoring::SigmoidWeightedCenList< T >::fcen10(), core::scoring::SigmoidWeightedCenList< T >::initialize(), and core::scoring::SigmoidWeightedCenList< T >::set_fcen10().

template<class T>
utility::vector1< T > core::scoring::SigmoidWeightedCenList< T >::fcen12_
private

Referenced by core::scoring::SigmoidWeightedCenList< T >::fcen12(), core::scoring::SigmoidWeightedCenList< T >::initialize(), and core::scoring::SigmoidWeightedCenList< T >::set_fcen12().

template<class T>
utility::vector1< T > core::scoring::SigmoidWeightedCenList< T >::fcen6_
private

Referenced by core::scoring::SigmoidWeightedCenList< T >::fcen6(), core::scoring::SigmoidWeightedCenList< T >::initialize(), core::scoring::SigmoidWeightedCenList< T >::set_fcen6(), and core::scoring::SigmoidWeightedCenList< T >::size().

The documentation for this class was generated from the following files:
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