| acc_bbg_in_bb_bb_hbond(Size const residue) const | core::scoring::hbonds::HBondSet | |
| allow_hbond(Size const index) const | core::scoring::hbonds::HBondSet | |
| allow_hbond(HBond const &hbond) const | core::scoring::hbonds::HBondSet | |
| append_hbond(Size const dhatm, conformation::Residue const &don_rsd, Size const aatm, conformation::Residue const &acc_rsd, HBEvalTuple const &hbe_tuple, Real const energy, Real const weight, HBondDerivs const &deriv) | core::scoring::hbonds::HBondSet | |
| atom_hbonds(AtomID const &atom, bool include_only_allowed=true) const | core::scoring::hbonds::HBondSet | |
| atom_hbonds_all(AtomID const &atom) const | core::scoring::hbonds::HBondSet | |
| atom_map_ | core::scoring::hbonds::HBondSet | mutableprivate |
| atom_map_init_ | core::scoring::hbonds::HBondSet | mutableprivate |
| AtomID typedef | core::scoring::hbonds::HBondSet | private |
| backbone_backbone_acceptor_ | core::scoring::hbonds::HBondSet | private |
| backbone_backbone_donor_ | core::scoring::hbonds::HBondSet | private |
| clear() | core::scoring::hbonds::HBondSet | |
| clone() const override | core::scoring::hbonds::HBondSet | |
| copy_bb_donor_acceptor_arrays(HBondSet const &src) | core::scoring::hbonds::HBondSet | |
| don_bbg_in_bb_bb_hbond(Size const residue) const | core::scoring::hbonds::HBondSet | |
| empty_hbond_vector_ | core::scoring::hbonds::HBondSet | private |
| hbond(Size const number) const | core::scoring::hbonds::HBondSet | |
| hbond_acc_npd_weight(Size index, Real setting) | core::scoring::hbonds::HBondSet | protected |
| hbond_cop(Size const number) const | core::scoring::hbonds::HBondSet | |
| hbond_don_npd_weight(Size index, Real setting) | core::scoring::hbonds::HBondSet | protected |
| hbond_options() const | core::scoring::hbonds::HBondSet | |
| HBondAtomMap typedef | core::scoring::hbonds::HBondSet | private |
| hbonds() const | core::scoring::hbonds::HBondSet | |
| hbonds_ | core::scoring::hbonds::HBondSet | private |
| HBondSet() | core::scoring::hbonds::HBondSet | |
| HBondSet(Size const nres) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondOptions const &options) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondOptions const &options, Size const nres) | core::scoring::hbonds::HBondSet | |
| HBondSet(pose::Pose &pose, bool const bb_only=true) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondOptions const &options, pose::Pose &pose, bool const bb_only=true) | core::scoring::hbonds::HBondSet | |
| HBondSet(core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::scoring::hbonds::HBondDatabase const &database) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondOptions const &options, core::conformation::Residue const &res1, core::conformation::Residue const &res2, core::scoring::hbonds::HBondDatabase const &database) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondSet const &src) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondSet const &src, utility::vector1< core::Size > exclude_list) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondSet const &src, utility::vector1< bool > residue_mask) | core::scoring::hbonds::HBondSet | |
| HBondSet(HBondSet const &src, Size seqpos) | core::scoring::hbonds::HBondSet | |
| nbrs(Size const seqpos) const | core::scoring::hbonds::HBondSet | |
| nbrs_ | core::scoring::hbonds::HBondSet | private |
| nhbonds() const | core::scoring::hbonds::HBondSet | |
| nhbonds(Size const seqpos, bool include_only_allowed=true) const | core::scoring::hbonds::HBondSet | |
| nhbonds(AtomID const &atom, bool include_only_allowed=true) const | core::scoring::hbonds::HBondSet | |
| operator<<(std::ostream &out, const HBondSet &hbond_set) | core::scoring::hbonds::HBondSet | friend |
| operator==(HBondSet const &a, HBondSet const &b) | core::scoring::hbonds::HBondSet | friend |
| options_ | core::scoring::hbonds::HBondSet | private |
| residue_hbonds(Size const seqpos, bool include_only_allowed=true) const | core::scoring::hbonds::HBondSet | |
| resize_bb_donor_acceptor_arrays(Size const new_dimension) | core::scoring::hbonds::HBondSet | |
| set_backbone_backbone_acceptor(Size const residue, bool state) | core::scoring::hbonds::HBondSet | inline |
| set_backbone_backbone_donor(Size const residue, bool state) | core::scoring::hbonds::HBondSet | inline |
| set_hbond_options(HBondOptions const &options) | core::scoring::hbonds::HBondSet | |
| set_nbrs(Size const seqpos, Size value) | core::scoring::hbonds::HBondSet | |
| setup_atom_map() const | core::scoring::hbonds::HBondSet | private |
| setup_for_residue_pair_energies(pose::Pose const &pose, bool const calculate_derivative=false, bool const backbone_only=true) | core::scoring::hbonds::HBondSet | |
| show(std::ostream &out) const | core::scoring::hbonds::HBondSet | |
| show() const | core::scoring::hbonds::HBondSet | inline |
| show(pose::Pose const &pose, bool const print_header, std::ostream &out) const | core::scoring::hbonds::HBondSet | |
| show(pose::Pose const &pose, bool const print_header=true) const | core::scoring::hbonds::HBondSet | |
| show(pose::Pose const &pose, Size const residue, bool const print_header, std::ostream &out) const | core::scoring::hbonds::HBondSet | |
| show(pose::Pose const &pose, Size const residue, bool const print_header=true) const | core::scoring::hbonds::HBondSet | inline |
| sort_by_weighted_energy() | core::scoring::hbonds::HBondSet | |
| ~HBondSet() override | core::scoring::hbonds::HBondSet | |
1.8.7