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Rosetta
2021.16
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Rosetta
2021.16
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This is the complete list of members for protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter, including all inherited members.
| add_filter_param(std::string const ¶m_name, core::Real const &value) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| add_filter_param(std::string const ¶m_name, core::Size const value) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| add_filter_param(std::string const ¶m_name, bool const value) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| add_filter_param(std::string const ¶m_name, std::string const &value) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| apply(core::pose::Pose const &original_pose, core::pose::Pose const &loop_pose, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map, utility::vector1< std::pair< core::Size, core::Size > > const &tail_residue_map, utility::vector1< std::pair< core::id::AtomID, numeric::xyzVector< core::Real > > > const &atomlist, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bondangles, utility::vector1< core::Real > const &bondlengths) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| apply_alpha_aa_rama_check(core::pose::Pose const &original_pose, core::pose::Pose const &loop_pose, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map, utility::vector1< std::pair< core::Size, core::Size > > const &tail_residue_map, utility::vector1< std::pair< core::id::AtomID, numeric::xyzVector< core::Real > > > const &atomlist, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bondangles, utility::vector1< core::Real > const &bondlengths) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| apply_atom_pair_distance(core::pose::Pose const &original_pose, core::pose::Pose const &loop_pose, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map, utility::vector1< std::pair< core::Size, core::Size > > const &tail_residue_map, utility::vector1< std::pair< core::id::AtomID, numeric::xyzVector< core::Real > > > const &atomlist, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bondangles, utility::vector1< core::Real > const &bondlengths) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| apply_backbone_bin(core::pose::Pose const &original_pose, core::pose::Pose const &loop_pose, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map, utility::vector1< std::pair< core::Size, core::Size > > const &tail_residue_map, utility::vector1< std::pair< core::id::AtomID, numeric::xyzVector< core::Real > > > const &atomlist, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bondangles, utility::vector1< core::Real > const &bondlengths) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| apply_loop_bump_check(core::pose::Pose const &original_pose, core::pose::Pose const &loop_pose, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map, utility::vector1< std::pair< core::Size, core::Size > > const &tail_residue_map, utility::vector1< std::pair< core::id::AtomID, numeric::xyzVector< core::Real > > > const &atomlist, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bondangles, utility::vector1< core::Real > const &bondlengths) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| apply_rama_prepro_check(core::pose::Pose const &original_pose, core::pose::Pose const &loop_pose, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map, utility::vector1< std::pair< core::Size, core::Size > > const &tail_residue_map, utility::vector1< std::pair< core::id::AtomID, numeric::xyzVector< core::Real > > > const &atomlist, utility::vector1< core::Real > const &torsions, utility::vector1< core::Real > const &bondangles, utility::vector1< core::Real > const &bondlengths) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| attach_boinc_ghost_observer() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| attach_boinc_ghost_observer_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| bin_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| bin_transition_calculator_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| binname() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| clone() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| define_valid_filter_name_enumeration(utility::tag::XMLSchemaDefinition &xsd) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | static |
| filter_params_bool_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| filter_params_real_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| filter_params_size_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| filter_params_string_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| filtertype_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| GeneralizedKICfilter() | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| GeneralizedKICfilter(GeneralizedKICfilter const &src) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_filter_param(std::string const ¶m_name, core::Real &outvalue) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_filter_param(std::string const ¶m_name, core::Size &outvalue) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_filter_param(std::string const ¶m_name, bool &outvalue) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_filter_param(std::string const ¶m_name, std::string &outvalue) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_filter_type_by_name(std::string const &filtername) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_filter_type_name(core::Size const filter_type) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_loop_index(core::Size const original_pose_index, utility::vector1< std::pair< core::Size, core::Size > > const &residue_map) const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| get_name() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| get_this_filter_type_name() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| load_bin_params(std::string const &bin_params_file) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| rama_cutoff_energy() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| rama_threshold_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| resnum() const | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| resnum_ | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | private |
| set_attach_boinc_ghost_observer(bool const setting) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| set_binname(std::string const &name_in) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| set_filter_type(filter_type const &ftype) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| set_filter_type(std::string const &ftypename) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | |
| set_rama_cutoff_energy(core::Real const &val) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| set_resnum(core::Size const val) | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter | inline |
| ~GeneralizedKICfilter() override | protocols::generalized_kinematic_closure::filter::GeneralizedKICfilter |
1.8.7