| aa() const | protocols::optimize_weights::PNatRotOptEPositionData | |
| aa() | protocols::optimize_weights::PNatRotOptEPositionData | |
| aa_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| add_rotamer_line_data(PNatRotOptERotamerDataOP rot_in) | protocols::optimize_weights::PNatRotOptEPositionData | |
| count_rotamer_as_native(PNatRotOptERotamerDataOP rotamer) const | protocols::optimize_weights::PNatRotOptEPositionData | |
| data() | protocols::optimize_weights::PNatRotOptEPositionData | |
| data() const | protocols::optimize_weights::PNatRotOptEPositionData | |
| data_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| EnergyMap typedef | protocols::optimize_weights::OptEPositionData | |
| get_score(Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| is_native_rotamer_well(utility::vector1< core::Size > const &rotamer_index) const | protocols::optimize_weights::PNatRotOptEPositionData | private |
| is_native_rotamer_well(utility::LexicographicalIterator const &lexiter) const | protocols::optimize_weights::PNatRotOptEPositionData | private |
| memory_use() const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| Multivec typedef | protocols::optimize_weights::OptEPositionData | |
| n_wells_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| native_chi_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| native_chi_periodicity_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| native_rotamer_index_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| OptEPositionData() | protocols::optimize_weights::OptEPositionData | |
| phi() const | protocols::optimize_weights::PNatRotOptEPositionData | |
| phi() | protocols::optimize_weights::PNatRotOptEPositionData | |
| phi_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| PNatRotOptEPositionData() | protocols::optimize_weights::PNatRotOptEPositionData | |
| print_score(std::ostream &ostr, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| process_score(std::ostream &ostr, bool print, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const, int const, EnergyMap const &fixed_terms, ScoreTypes const &, ScoreTypes const &fixed_score_list) const | protocols::optimize_weights::PNatRotOptEPositionData | |
| psi() const | protocols::optimize_weights::PNatRotOptEPositionData | |
| psi() | protocols::optimize_weights::PNatRotOptEPositionData | |
| psi_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| range(ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| read_from_binary_file(std::ifstream &infile) override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| read_from_file(std::ifstream &infile) override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| Real typedef | protocols::optimize_weights::OptEPositionData | |
| rotamer_data_begin() const | protocols::optimize_weights::PNatRotOptEPositionData | |
| rotamer_data_end() const | protocols::optimize_weights::PNatRotOptEPositionData | |
| rotamer_index_2_well_id(utility::vector1< core::Size > const &rotamer_index) const | protocols::optimize_weights::PNatRotOptEPositionData | private |
| rotamer_index_2_well_id(utility::LexicographicalIterator const &lexiter) const | protocols::optimize_weights::PNatRotOptEPositionData | private |
| rotamer_well_counts_ | protocols::optimize_weights::PNatRotOptEPositionData | private |
| ScoreTypes typedef | protocols::optimize_weights::OptEPositionData | |
| set_native_chi_periodicity(utility::vector1< Real > const &native_chi_periodicity) | protocols::optimize_weights::PNatRotOptEPositionData | |
| set_native_rotamer_chi(utility::vector1< Real > const &native_chi) | protocols::optimize_weights::PNatRotOptEPositionData | |
| set_native_rotamer_index(utility::vector1< core::Size > const &native_rotamer_index) | protocols::optimize_weights::PNatRotOptEPositionData | |
| set_rotamer_well_counts(utility::vector1< core::Size > const &rotamer_well_counts) | protocols::optimize_weights::PNatRotOptEPositionData | |
| size() const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| Size typedef | protocols::optimize_weights::OptEPositionData | |
| tag(std::string const &tag_in) | protocols::optimize_weights::OptEPositionData | |
| tag() const | protocols::optimize_weights::OptEPositionData | |
| type() const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| update_range(SingleStructureDataCOP structure, ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const | protocols::optimize_weights::OptEPositionData | protected |
| write_to_binary_file(std::ofstream &outfile) const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| write_to_file(std::ofstream &outfile) const override | protocols::optimize_weights::PNatRotOptEPositionData | virtual |
| ~OptEPositionData() override | protocols::optimize_weights::OptEPositionData | |
| ~PNatRotOptEPositionData() override | protocols::optimize_weights::PNatRotOptEPositionData | |
1.8.7