protocols::features::strand_assembly::StrandBundleFeatures Member List

This is the complete list of members for protocols::features::strand_assembly::StrandBundleFeatures, including all inherited members.

check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1) const	protocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const	protocols::features::FeaturesReporter
check_relevant_residues(utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const	protocols::features::FeaturesReporter
check_relevant_residues_range(utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const	protocols::features::FeaturesReporter
check_strand_too_closeness(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j)	protocols::features::strand_assembly::StrandBundleFeatures
check_sw_by_dis(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j, bool antiparalell)	protocols::features::strand_assembly::StrandBundleFeatures
class_name()	protocols::features::strand_assembly::StrandBundleFeatures	static
delete_record(StructureID, utility::sql_database::sessionOP)	protocols::features::FeaturesReporter	inlinevirtual
delete_records_from_table(std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)	protocols::features::FeaturesReporter	protected
extract_native_only_	protocols::features::strand_assembly::StrandBundleFeatures	private
features_reporter_dependencies() const override	protocols::features::strand_assembly::StrandBundleFeatures	virtual
FeaturesReporter()	protocols::features::FeaturesReporter	inline
final_check_sw_by_dis(core::pose::Pose const &pose, StrandFragment temp_strand_ii_i, StrandFragment temp_strand_ii_j, StrandFragment temp_strand_jj_i, StrandFragment temp_strand_jj_j, bool antiparalell)	protocols::features::strand_assembly::StrandBundleFeatures
find_antiparallel(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j)	protocols::features::strand_assembly::StrandBundleFeatures
find_parallel(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j)	protocols::features::strand_assembly::StrandBundleFeatures
find_tag(core::pose::Pose const &pose) const	protocols::features::FeaturesReporter	protected
get_avg_dis_CA_CA(core::pose::Pose const &pose, core::Size i_resnum, core::Size i_resnum_1, core::Size i_resnum_2, core::Size i_resnum_3, core::Size j_resnum, core::Size j_resnum_1, core::Size j_resnum_2, core::Size j_resnum_3)	protocols::features::strand_assembly::StrandBundleFeatures
get_full_strands(StructureID struct_id, utility::sql_database::sessionOP db_session)	protocols::features::strand_assembly::StrandBundleFeatures
get_nearest_res_from_strand(core::pose::Pose const &pose, StrandFragment strand_to_be_searched, core::Size rounded_resnum)	protocols::features::strand_assembly::StrandBundleFeatures
get_relevant_residues_mode() const	protocols::features::FeaturesReporter
get_selected_strands(StructureID struct_id, utility::sql_database::sessionOP db_session)	protocols::features::strand_assembly::StrandBundleFeatures
get_shortest_among_4(core::Real val_shortest_dis_sidechain_1, core::Real val_shortest_dis_sidechain_2, core::Real val_shortest_dis_sidechain_3, core::Real val_shortest_dis_sidechain_4)	protocols::features::strand_assembly::StrandBundleFeatures
get_strand_from_bss_id(StructureID struct_id, utility::sql_database::sessionOP db_session, core::Size bss_id)	protocols::features::strand_assembly::StrandBundleFeatures
get_strand_pairs(StructureID struct_id, utility::sql_database::sessionOP db_session)	protocols::features::strand_assembly::StrandBundleFeatures
init_from_options()	protocols::features::strand_assembly::StrandBundleFeatures
judge_facing(core::pose::Pose const &pose, StrandFragment strand_ii_i, StrandFragment strand_ii_j, StrandFragment strand_jj_i, StrandFragment strand_jj_j)	protocols::features::strand_assembly::StrandBundleFeatures
judge_sw_dis_too_close(core::pose::Pose const &pose, StrandFragment temp_strand_ii_i, StrandFragment temp_strand_ii_j, StrandFragment temp_strand_jj_i, StrandFragment temp_strand_jj_j)	protocols::features::strand_assembly::StrandBundleFeatures
judge_sw_inter_dis(core::pose::Pose const &pose, StrandFragment temp_strand_ii_i, StrandFragment temp_strand_ii_j, StrandFragment temp_strand_jj_i, StrandFragment temp_strand_jj_j)	protocols::features::strand_assembly::StrandBundleFeatures
judge_sw_torsion(core::pose::Pose const &pose, StrandFragment temp_strand_ii_i, StrandFragment temp_strand_ii_j, StrandFragment temp_strand_jj_i, StrandFragment temp_strand_jj_j)	protocols::features::strand_assembly::StrandBundleFeatures
load_into_pose(utility::sql_database::sessionOP, StructureID, core::pose::Pose &)	protocols::features::FeaturesReporter	inlinevirtual
max_num_strands_to_deal_	protocols::features::strand_assembly::StrandBundleFeatures	private
max_O_N_dis_	protocols::features::strand_assembly::StrandBundleFeatures	private
max_res_in_strand_	protocols::features::strand_assembly::StrandBundleFeatures	private
max_sheet_angle_	protocols::features::strand_assembly::StrandBundleFeatures	private
max_sheet_dis_	protocols::features::strand_assembly::StrandBundleFeatures	private
max_sheet_torsion_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_num_strands_to_deal_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_O_N_dis_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_res_in_strand_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_sheet_angle_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_sheet_dis_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_sheet_torsion_	protocols::features::strand_assembly::StrandBundleFeatures	private
min_shortest_dis_sidechain_inter_sheet_	protocols::features::strand_assembly::StrandBundleFeatures	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &)	protocols::features::FeaturesReporter	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::features::strand_assembly::StrandBundleFeatures	static
relevant_residues_mode_	protocols::features::FeaturesReporter	protected
report_features(core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) override	protocols::features::strand_assembly::StrandBundleFeatures	virtual
protocols::features::FeaturesReporter::report_features(core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)	protocols::features::FeaturesReporter
round(core::Real x)	protocols::features::strand_assembly::StrandBundleFeatures
schema() const	protocols::features::FeaturesReporter	inlinevirtual
set_relevant_residues_mode(RelevantResiduesMode::T setting)	protocols::features::FeaturesReporter
sheet_dis_by_terminals(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j)	protocols::features::strand_assembly::StrandBundleFeatures
sheet_torsion(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j)	protocols::features::strand_assembly::StrandBundleFeatures
shortest_dis_sidechain(core::pose::Pose const &pose, StrandFragment strand_i, StrandFragment strand_j)	protocols::features::strand_assembly::StrandBundleFeatures
StrandBundleFeatures()	protocols::features::strand_assembly::StrandBundleFeatures
type_name() const override	protocols::features::strand_assembly::StrandBundleFeatures	virtual
write_schema_to_db(utility::sql_database::sessionOP db_session) const override	protocols::features::strand_assembly::StrandBundleFeatures	virtual
~FeaturesReporter() override	protocols::features::FeaturesReporter