MCAligner.cc File Reference

class definition for a class that aligns two Sequence objects using a stochastic version of the Needleman-Wunsch algorithm. More...

#include <core/types.hh>
#include <core/sequence/Aligner.hh>
#include <core/sequence/MCAligner.hh>
#include <core/sequence/NWAligner.hh>
#include <core/sequence/ScoringScheme.hh>
#include <core/sequence/ScoringScheme.fwd.hh>
#include <core/sequence/DP_Matrix.hh>
#include <core/sequence/Sequence.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <numeric/random/random.hh>
#include <utility/vector1.hh>
#include <iostream>
#include <string>

Namespaces
	core
	A class for reading in the atom type properties.
	core::sequence

Detailed Description

class definition for a class that aligns two Sequence objects using a stochastic version of the Needleman-Wunsch algorithm.

Author

James Thompson