| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | inlinevirtual |
| cen_cfg_file_ | core::energy_methods::SAXSEnergy | static |
| clone() const override | core::energy_methods::SAXSEnergy | inlinevirtual |
| compute_intensities(const core::pose::Pose &, utility::vector1< Real > &) const | core::energy_methods::SAXSEnergy | protected |
| compute_zero_intensity() const | core::energy_methods::SAXSEnergy | |
| count_scoring_atoms() | core::energy_methods::SAXSEnergy | inline |
| create_energy_method(core::scoring::methods::EnergyMethodOptions const &) const | core::energy_methods::SAXSEnergy | inline |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | virtual |
| fa_cfg_file_ | core::energy_methods::SAXSEnergy | static |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_after_minimizing(pose::Pose &pose) const | core::scoring::methods::EnergyMethod | virtual |
| finalize_total_energy(pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const override | core::energy_methods::SAXSEnergy | virtual |
| fit_intensities(const utility::vector1< Real > &, const utility::vector1< Real > &, utility::vector1< Real > &) const | core::energy_methods::SAXSEnergy | protected |
| get_pose_intensities() | core::energy_methods::SAXSEnergy | inline |
| get_q() | core::energy_methods::SAXSEnergy | inline |
| get_reference_intensities() | core::energy_methods::SAXSEnergy | inline |
| indicate_required_context_graphs(utility::vector1< bool > &) const override | core::energy_methods::SAXSEnergy | inlinevirtual |
| init_ff(const std::string &) | core::energy_methods::SAXSEnergy | protected |
| method_type() const override | core::scoring::methods::WholeStructureEnergy | virtual |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | virtual |
| parent typedef | core::scoring::methods::WholeStructureEnergy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | virtual |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | core::scoring::methods::EnergyMethod | virtual |
| read_intensities(std::string &, utility::vector1< Real > &) const | core::energy_methods::SAXSEnergy | protected |
| read_spectrum(std::string &, utility::vector1< Real > &, utility::vector1< Real > &) const | core::energy_methods::SAXSEnergy | protected |
| rehash_form_factors(const core::pose::Pose &pose) const | core::energy_methods::SAXSEnergy | protected |
| requires_a_setup_for_scoring_for_residue_opportunity_during_regular_scoring(pose::Pose const &pose) const | core::scoring::methods::EnergyMethod | virtual |
| saxs_score_variant_ | core::energy_methods::SAXSEnergy | protected |
| SAXSEnergy(std::string &, core::chemical::ResidueTypeSetCAP, core::scoring::ScoreType, core::scoring::methods::EnergyMethodCreatorOP) | core::energy_methods::SAXSEnergy | |
| SAXSEnergy(const std::string &, const utility::vector1< Real > &, const utility::vector1< Real > &, core::scoring::ScoreType, core::scoring::methods::EnergyMethodCreatorOP) | core::energy_methods::SAXSEnergy | |
| SAXSEnergyFA() | core::energy_methods::SAXSEnergyFA | inline |
| score_types() const | core::scoring::methods::EnergyMethod | inline |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | protected |
| set_up_q(const utility::vector1< Real > &) | core::energy_methods::SAXSEnergy | protected |
| set_up_q() | core::energy_methods::SAXSEnergy | protected |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_packing_with_rotsets(pose::Pose &pose, pack_basic::RotamerSetsBaseOP const &rotsets, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | virtual |
| setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, basic::datacache::BasicDataCache &residue_data_cache) const | core::scoring::methods::EnergyMethod | virtual |
| show_additional_info(std::ostream &, pose::Pose &, bool) const | core::scoring::methods::EnergyMethod | virtual |
| the_config_file_ | core::energy_methods::SAXSEnergy | protected |
| total_energy(const pose::Pose &pose) const | core::energy_methods::SAXSEnergy | |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | virtual |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~SAXSEnergy() override | core::energy_methods::SAXSEnergy | inline |
| ~WholeStructureEnergy() override | core::scoring::methods::WholeStructureEnergy | inline |
1.8.7