protocols::antibody::clusters::BasicCDRClusterSet Class Reference

Basic container class for CDRClusterSet, with some extra information. More...

#include <CDRClusterSet.hh>

Inheritance diagram for protocols::antibody::clusters::BasicCDRClusterSet:

Public Member Functions
	BasicCDRClusterSet ()
	BasicCDRClusterSet (utility::vector1< CDRClusterOP > clusters)
	BasicCDRClusterSet (BasicCDRClusterSet const &src)
	~BasicCDRClusterSet () override
basic::datacache::CacheableDataOP	clone () const override
void	set_cluster (CDRNameEnum cdr, CDRClusterCOP cluster)
	Set the CDRCluster. More...
CDRClusterCOP	get_cluster (CDRNameEnum cdr) const
	Get the CDRCluster. More...
void	set_clusters (utility::vector1< CDRClusterOP > const clusters)
	Get the full set of CDRClusters. More...

Private Attributes
utility::vector1< CDRClusterOP >	clusters_
	Get the full set of CDRClusters. More...

Detailed Description

Basic container class for CDRClusterSet, with some extra information.

Constructor & Destructor Documentation

protocols::antibody::clusters::BasicCDRClusterSet::BasicCDRClusterSet

(

)

References clusters_.

protocols::antibody::clusters::BasicCDRClusterSet::BasicCDRClusterSet

(

utility::vector1< CDRClusterOP >

clusters

)

References set_clusters().

protocols::antibody::clusters::BasicCDRClusterSet::BasicCDRClusterSet

(

BasicCDRClusterSet const &

src

)

References clusters_, and set_clusters().

protocols::antibody::clusters::BasicCDRClusterSet::~BasicCDRClusterSet ( )

overridedefault

Member Function Documentation

CacheableDataOP protocols::antibody::clusters::BasicCDRClusterSet::clone ( ) const

override

CDRClusterCOP protocols::antibody::clusters::BasicCDRClusterSet::get_cluster

(

CDRNameEnum

cdr

)

const

Get the CDRCluster.

References clusters_.

Referenced by protocols::antibody::clusters::add_cluster_comments_to_pose(), protocols::antibody::constraints::CDRDihedralConstraintMover::apply(), protocols::antibody::design::MutateFrameworkForCluster::apply(), protocols::antibody::clusters::get_cluster_from_cache_or_ab_info(), protocols::antibody::AntibodyDatabaseManager::load_cdr_design_data_for_cdrs(), protocols::antibody::AntibodyDatabaseManager::load_cdr_poses(), protocols::antibody::AntibodyDatabaseManager::load_cdr_sequences(), and protocols::antibody::AntibodyInfo::setup_CDR_cluster().

void protocols::antibody::clusters::BasicCDRClusterSet::set_cluster	(	CDRNameEnum	cdr,
		CDRClusterCOP	cluster
	)

Set the CDRCluster.

References clusters_.

Referenced by set_clusters().

void protocols::antibody::clusters::BasicCDRClusterSet::set_clusters

(

utility::vector1< CDRClusterOP > const

clusters

)

Get the full set of CDRClusters.

References clusters_, and set_cluster().

Referenced by BasicCDRClusterSet().

Member Data Documentation

utility::vector1< CDRClusterOP > protocols::antibody::clusters::BasicCDRClusterSet::clusters_

private

Get the full set of CDRClusters.

One cluster per CDR as we assume the max we have is one L and one H from AntibodyInfo. The trick to have more than one LH will be to have a composite of AntibodyInfo objects and mutable AbChains.

Referenced by BasicCDRClusterSet(), get_cluster(), set_cluster(), and set_clusters().

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The documentation for this class was generated from the following files:

• src/protocols/antibody/clusters/CDRClusterSet.hh
• src/protocols/antibody/clusters/CDRClusterSet.cc