SequenceMetric.cc File Reference

A SimpleMetric to output the single-letter OR three-letter sequence of a protein or subset of positions/regions using a ResidueSelector. More...

#include <core/simple_metrics/metrics/SequenceMetric.hh>
#include <core/simple_metrics/simple_metric_creators.hh>
#include <core/simple_metrics/StringMetric.hh>
#include <core/simple_metrics/util.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/util.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueType.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/util.hh>
#include <utility/string_util.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <map>

Namespaces
	core
	A class for reading in the atom type properties.
	core::simple_metrics
	core::simple_metrics::metrics

Functions
static basic::Tracer	TR ("core.simple_metrics.metrics.SequenceMetric")
static const std::map < SequenceMetricMode, std::string >	core::simple_metrics::metrics::mode_to_name_map_ ({{SMM_ONELETTER_CODE,"oneletter"},{SMM_THREELETTER_CODE,"threeletter"},{SMM_BASE_NAME,"basename"},{SMM_FULL_NAME,"fullname"},{SMM_INVALID_MODE,"INVALID"}})
	The map of enum to name. More...

Detailed Description

A SimpleMetric to output the single-letter OR three-letter sequence of a protein or subset of positions/regions using a ResidueSelector.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Vikram K. Mulligan (vmull.nosp@m.igan.nosp@m.@flat.nosp@m.iron.nosp@m.insti.nosp@m.tute.nosp@m..org) – Added support for writing full residue type names or basenames.

Function Documentation

static basic::Tracer TR ( "core.simple_metrics.metrics.SequenceMetric"  )

static