CreateGlycanSequonMover.cc File Reference

Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry. More...

#include <protocols/carbohydrates/CreateGlycanSequonMover.hh>
#include <protocols/carbohydrates/CreateGlycanSequonMoverCreator.hh>
#include <protocols/calc_taskop_movers/CreateSequenceMotifMover.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/ReturnResidueSubsetSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <basic/Tracer.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <utility/tag/XMLSchemaGeneration.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::carbohydrates

Functions
static basic::Tracer	TR ("protocols.carbohydrates.CreateGlycanSequonMover")
std::map< GlycanSequon, std::string >	protocols::carbohydrates::create_sequons ()
	Create a map of the name and full sequon. More...
std::ostream &	protocols::carbohydrates::operator<< (std::ostream &os, CreateGlycanSequonMover const &mover)
	private methods /// More...

Detailed Description

Mutates residues to create a potential glycosylation site using known sequence motifs of N- or C- linked glycans. Includes options for Enhanced Sequons for N-linked glycans that have been shown to have higher rates of glycosylation as well as other positions that have been shown to influence the glycosylation chemistry.

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)

Function Documentation

static basic::Tracer TR ( "protocols.carbohydrates.CreateGlycanSequonMover"  )

static