protocols::glycopeptide_docking::GlycopeptideDockingFlags Member List

This is the complete list of members for protocols::glycopeptide_docking::GlycopeptideDockingFlags, including all inherited members.

additional_metrics()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
additional_metrics_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
allow_glycan_torsion_moves_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
anchor_residue_substrate() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
anchor_residue_substrate_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
clone() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
constraints_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
debug_pdbs()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
debug_pdbs_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
donor_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
downstream_chains_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
enable_additional_metrics(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
enable_backbone_moves_pp_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
enable_backbone_moves_substrate()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
first_residue_enzyme() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
first_residue_enzyme_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
first_residue_substrate() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
first_residue_substrate_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
get_allow_glycan_torsion_moves()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_anchor_residue()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_backbone_moves()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_constraints_file()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_downstream_chain()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_glycosylation_residue()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_interface_distance()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_interface_moves()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_residues_to_preglycosylate()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_resnum(core::pose::Pose const &pose, std::string const &special_residue)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
get_sugar_donor()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_sugars_to_preglycosylate()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
get_upstream_chain()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
GlycopeptideDockingFlags()	protocols::glycopeptide_docking::GlycopeptideDockingFlags
glycosylation_high_res_refinement_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
glycosylation_low_res_refinement_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
glycosylation_residue_substrate() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
high_res_outer_cycles()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
high_res_outer_cycles_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
high_res_refinement()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
interface_distance_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
jump_num_substrate() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
jump_num_substrate_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
last_residue_enzyme() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
last_residue_enzyme_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
last_residue_substrate() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
last_residue_substrate_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
low_res_inner_cycles()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
low_res_inner_cycles_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
low_res_outer_cycles()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
low_res_outer_cycles_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
low_res_refinement()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
nevery_interface_moves_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
ntotal_backbone_moves_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
pack_anchor()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
preglycosylate_residues_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
preglycosylate_sugars_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
prevent_anchor_repacking_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
randomize_substrate_torsions()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
randomize_substrate_torsions_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
residue_to_glycosylate_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
score_only()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
score_only_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
set_allow_glycan_torsion_moves(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_anchor_repacking(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_anchor_residue(core::pose::Pose const &pose, std::string const &special_residue)	protocols::glycopeptide_docking::GlycopeptideDockingFlags
set_anchor_residue(core::Size in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_backbone_moves(core::Size n)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_backbone_moves_substrate(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_constraints_file(std::string const &filename)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_debug_pdbs(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_downstream_chain(std::string const &chain)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_enzyme_chain(core::pose::Pose const &pose)	protocols::glycopeptide_docking::GlycopeptideDockingFlags
set_fold_tree_type(std::string const &in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_glycosylation_refinement(bool low, bool high)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_glycosylation_residue(core::pose::Pose const &pose, std::string const &special_residue)	protocols::glycopeptide_docking::GlycopeptideDockingFlags
set_glycosylation_residue(core::Size in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_interface_distance(core::Real distance)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_interface_moves(core::Size n)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_randomize_substrate_torsions(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_residues_to_preglycosylate(utility::vector1< core::Size > in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_score_only(bool in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_substrate_chain(core::pose::Pose const &pose)	protocols::glycopeptide_docking::GlycopeptideDockingFlags
set_substrate_type(std::string const &in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_sugar_donor(core::Size in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_sugars_to_preglycosylate(utility::vector1< std::string > in)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
set_upstream_chain(std::string const &chain)	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
setup_from_options()	protocols::glycopeptide_docking::GlycopeptideDockingFlags
show() const	protocols::glycopeptide_docking::GlycopeptideDockingFlags
substrate_type()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
substrate_type_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
tree_type()	protocols::glycopeptide_docking::GlycopeptideDockingFlags	inline
tree_type_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private
upstream_chains_	protocols::glycopeptide_docking::GlycopeptideDockingFlags	private