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core::scoring::constraints::ConstraintEdge Class Reference

#include <ConstraintGraph.hh>

Inheritance diagram for core::scoring::constraints::ConstraintEdge:
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Public Types

typedef utility::graph::Edge parent
 
typedef utility::graph::Edge Edge
 

Public Member Functions

 ConstraintEdge (utility::graph::Graph *owner, Size first_node_ind, Size second_node_ind)
 
 ConstraintEdge (utility::graph::Graph *owner, ConstraintEdge const &example_edge)
 
 ~ConstraintEdge () override
 
void copy_from (Edge const *source) override
 
Size count_static_memory () const override
 
Size count_dynamic_memory () const override
 
void bond_geometry_energy (Energy)
 
void rna_bond_geometry_energy (Energy)
 
void atom_pair_constraint_energy (Energy)
 
void base_pair_constraint_energy (Energy)
 
void coordinate_constraint_energy (Energy)
 
void angle_constraint_energy (Energy)
 
void dihedral_constraint_energy (Energy)
 
void backbone_stub_constraint_energy (Energy)
 
void backbone_stub_linear_constraint_energy (Energy)
 
void res_type_linking_constraint_energy (Energy)
 
void metalbinding_constraint_energy (Energy)
 
Energy bond_geometry_energy () const
 
Energy rna_bond_geometry_energy () const
 
Energy atom_pair_constraint_energy () const
 
Energy base_pair_constraint_energy () const
 
Energy coordinate_constraint_energy () const
 
Energy angle_constraint_energy () const
 
Energy dihedral_constraint_energy () const
 
Energy backbone_stub_constraint_energy () const
 
Energy backbone_stub_linear_constraint_energy () const
 
Energy res_type_linking_constraint_energy () const
 
Energy metalbinding_constraint_energy () const
 
void energy_computed (bool setting)
 
bool energy_computed () const
 

Private Attributes

Energy bond_geometry_energy_
 
Energy rna_bond_geometry_energy_
 
Energy atom_pair_constraint_energy_
 
Energy base_pair_constraint_energy_
 
Energy coordinate_constraint_energy_
 
Energy angle_constraint_energy_
 
Energy dihedral_constraint_energy_
 
Energy backbone_stub_constraint_energy_
 
Energy backbone_stub_linear_constraint_energy_
 
Energy res_type_linking_constraint_energy_
 
Energy metalbinding_constraint_energy_
 
bool energy_computed_
 

Member Typedef Documentation

typedef utility::graph::Edge core::scoring::constraints::ConstraintEdge::Edge
typedef utility::graph::Edge core::scoring::constraints::ConstraintEdge::parent

Constructor & Destructor Documentation

core::scoring::constraints::ConstraintEdge::ConstraintEdge ( utility::graph::Graph *  owner,
Size  first_node_ind,
Size  second_node_ind 
)

Referenced by count_static_memory().

core::scoring::constraints::ConstraintEdge::ConstraintEdge ( utility::graph::Graph *  owner,
ConstraintEdge const &  example_edge 
)
core::scoring::constraints::ConstraintEdge::~ConstraintEdge ( )
overridedefault

Member Function Documentation

void core::scoring::constraints::ConstraintEdge::angle_constraint_energy ( Energy  setting)

References angle_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::angle_constraint_energy ( ) const

References angle_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::atom_pair_constraint_energy ( Energy  setting)

References atom_pair_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::atom_pair_constraint_energy ( ) const

References atom_pair_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::backbone_stub_constraint_energy ( Energy  setting)

References backbone_stub_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::backbone_stub_constraint_energy ( ) const

References backbone_stub_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::backbone_stub_linear_constraint_energy ( Energy  setting)

References backbone_stub_linear_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::backbone_stub_linear_constraint_energy ( ) const

References backbone_stub_linear_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::base_pair_constraint_energy ( Energy  setting)

References base_pair_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::base_pair_constraint_energy ( ) const

References base_pair_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::bond_geometry_energy ( Energy  setting)

References bond_geometry_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::bond_geometry_energy ( ) const

References bond_geometry_energy_.

void core::scoring::constraints::ConstraintEdge::coordinate_constraint_energy ( Energy  setting)

References coordinate_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::coordinate_constraint_energy ( ) const

References coordinate_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::copy_from ( Edge const *  source)
override

References angle_constraint_energy_, atom_pair_constraint_energy_, backbone_stub_constraint_energy_, backbone_stub_linear_constraint_energy_, base_pair_constraint_energy_, bond_geometry_energy_, coordinate_constraint_energy_, dihedral_constraint_energy_, energy_computed_, metalbinding_constraint_energy_, res_type_linking_constraint_energy_, and rna_bond_geometry_energy_.

Size core::scoring::constraints::ConstraintEdge::count_dynamic_memory ( ) const
override
Size core::scoring::constraints::ConstraintEdge::count_static_memory ( ) const
override

References ConstraintEdge().

void core::scoring::constraints::ConstraintEdge::dihedral_constraint_energy ( Energy  setting)

References dihedral_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::dihedral_constraint_energy ( ) const

References dihedral_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::energy_computed ( bool  setting)

References energy_computed_.

Referenced by core::scoring::constraints::CstResNeighbIterator::energy_computed(), core::scoring::constraints::CstResNeighbConstIterator::energy_computed(), core::scoring::constraints::CstResNeighbIterator::mark_energy_computed(), and core::scoring::constraints::CstResNeighbIterator::mark_energy_uncomputed().

bool core::scoring::constraints::ConstraintEdge::energy_computed ( ) const

References energy_computed_.

void core::scoring::constraints::ConstraintEdge::metalbinding_constraint_energy ( Energy  setting)

References metalbinding_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::metalbinding_constraint_energy ( ) const

References metalbinding_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::res_type_linking_constraint_energy ( Energy  setting)

References res_type_linking_constraint_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::res_type_linking_constraint_energy ( ) const

References res_type_linking_constraint_energy_.

void core::scoring::constraints::ConstraintEdge::rna_bond_geometry_energy ( Energy  setting)

References rna_bond_geometry_energy_.

Referenced by core::scoring::constraints::CstResNeighbIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbConstIterator::accumulate_energy(), core::scoring::constraints::CstResNeighbIterator::retrieve_energy(), core::scoring::constraints::CstResNeighbConstIterator::retrieve_energy(), and core::scoring::constraints::CstResNeighbIterator::save_energy().

Energy core::scoring::constraints::ConstraintEdge::rna_bond_geometry_energy ( ) const

References rna_bond_geometry_energy_.

Member Data Documentation

Energy core::scoring::constraints::ConstraintEdge::angle_constraint_energy_
private

Referenced by angle_constraint_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::atom_pair_constraint_energy_
private

Referenced by atom_pair_constraint_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::backbone_stub_constraint_energy_
private

Referenced by backbone_stub_constraint_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::backbone_stub_linear_constraint_energy_
private

Referenced by backbone_stub_linear_constraint_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::base_pair_constraint_energy_
private

Referenced by base_pair_constraint_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::bond_geometry_energy_
private

Referenced by bond_geometry_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::coordinate_constraint_energy_
private

Referenced by coordinate_constraint_energy(), and copy_from().

Energy core::scoring::constraints::ConstraintEdge::dihedral_constraint_energy_
private

Referenced by copy_from(), and dihedral_constraint_energy().

bool core::scoring::constraints::ConstraintEdge::energy_computed_
private

Referenced by copy_from(), and energy_computed().

Energy core::scoring::constraints::ConstraintEdge::metalbinding_constraint_energy_
private

Referenced by copy_from(), and metalbinding_constraint_energy().

Energy core::scoring::constraints::ConstraintEdge::res_type_linking_constraint_energy_
private

Referenced by copy_from(), and res_type_linking_constraint_energy().

Energy core::scoring::constraints::ConstraintEdge::rna_bond_geometry_energy_
private

Referenced by copy_from(), and rna_bond_geometry_energy().

The documentation for this class was generated from the following files:
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