protocols::optimize_weights::PNatStructureOptEData Member List

This is the complete list of members for protocols::optimize_weights::PNatStructureOptEData, including all inherited members.

add_decoy(SingleStructureDataOP decoy)	protocols::optimize_weights::PNatStructureOptEData
add_native(SingleStructureDataOP native)	protocols::optimize_weights::PNatStructureOptEData
decoys_	protocols::optimize_weights::PNatStructureOptEData	protected
EnergyMap typedef	protocols::optimize_weights::OptEPositionData
get_score(Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const override	protocols::optimize_weights::PNatStructureOptEData	virtual
high_entropy_rms_cutoff_	protocols::optimize_weights::PNatStructureOptEData	protectedstatic
initial_decoy_stddev_	protocols::optimize_weights::PNatStructureOptEData	protected
memory_use() const override	protocols::optimize_weights::PNatStructureOptEData	virtual
Multivec typedef	protocols::optimize_weights::OptEPositionData
n_high_entropy_decoys_	protocols::optimize_weights::PNatStructureOptEData	protected
n_top_natives_to_score(core::Size n_top)	protocols::optimize_weights::PNatStructureOptEData
n_top_natives_to_score() const	protocols::optimize_weights::PNatStructureOptEData
n_top_natives_to_score_	protocols::optimize_weights::PNatStructureOptEData	protected
nativeness(Real rms) const	protocols::optimize_weights::PNatStructureOptEData
nativeness_high()	protocols::optimize_weights::PNatStructureOptEData	static
nativeness_low()	protocols::optimize_weights::PNatStructureOptEData	static
nativeness_rms_high_	protocols::optimize_weights::PNatStructureOptEData	protectedstatic
nativeness_rms_low_	protocols::optimize_weights::PNatStructureOptEData	protectedstatic
nativeness_sum_	protocols::optimize_weights::PNatStructureOptEData	protected
natives_	protocols::optimize_weights::PNatStructureOptEData	protected
normalize_decoy_stddev_	protocols::optimize_weights::PNatStructureOptEData	protected
OptEPositionData()	protocols::optimize_weights::OptEPositionData
PNatStructureOptEData()	protocols::optimize_weights::PNatStructureOptEData
print_score(std::ostream &ostr, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const override	protocols::optimize_weights::PNatStructureOptEData	virtual
process_score(std::ostream &ostr, bool print, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const	protocols::optimize_weights::PNatStructureOptEData
range(ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const override	protocols::optimize_weights::PNatStructureOptEData	virtual
read_from_binary_file(std::ifstream &infile) override	protocols::optimize_weights::PNatStructureOptEData	virtual
read_from_file(std::ifstream &infile) override	protocols::optimize_weights::PNatStructureOptEData	virtual
Real typedef	protocols::optimize_weights::OptEPositionData
ScoreTypes typedef	protocols::optimize_weights::OptEPositionData
set_initial_decoy_stddev(Real setting)	protocols::optimize_weights::PNatStructureOptEData
set_nativeness_high(Real nativeness_rms_low)	protocols::optimize_weights::PNatStructureOptEData	static
set_nativeness_low(Real nativeness_rms_low)	protocols::optimize_weights::PNatStructureOptEData	static
set_normalize_decoy_stddev(bool setting)	protocols::optimize_weights::PNatStructureOptEData
set_total_residue(core::Size total_residue)	protocols::optimize_weights::PNatStructureOptEData
Size typedef	protocols::optimize_weights::OptEPositionData
size() const override	protocols::optimize_weights::PNatStructureOptEData	virtual
tag(std::string const &tag_in)	protocols::optimize_weights::OptEPositionData
tag() const	protocols::optimize_weights::OptEPositionData
total_residue_	protocols::optimize_weights::PNatStructureOptEData	protected
type() const override	protocols::optimize_weights::PNatStructureOptEData	virtual
update_range(SingleStructureDataCOP structure, ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const	protocols::optimize_weights::OptEPositionData	protected
write_to_binary_file(std::ofstream &outfile) const override	protocols::optimize_weights::PNatStructureOptEData	virtual
write_to_file(std::ofstream &outfile) const override	protocols::optimize_weights::PNatStructureOptEData	virtual
~OptEPositionData() override	protocols::optimize_weights::OptEPositionData
~PNatStructureOptEData() override	protocols::optimize_weights::PNatStructureOptEData