core::fragment::UpJumpSRFD Class Reference

#include <JumpSRFD.hh>

Inheritance diagram for core::fragment::UpJumpSRFD:

Public Member Functions
	UpJumpSRFD (char sequence= 'X')
SingleResidueFragDataOP	clone () const override
	clone More...
SingleResidueFragDataOP	create () const override
	create a new instance of this object More...
bool	apply (pose::Pose &, Size const, Frame const &) const override
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ); More...
bool	apply (kinematics::MoveMap const &, pose::Pose &, Size const, Frame const &) const override
	insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ) for dofs that are allowed to move in the MoveMap More...
bool	apply_ss (std::string &, Size, Frame const &) const override
	insert fragment_data sec-struct into ss-string at position seq_pos More...
bool	steal (pose::Pose const &, Size, Frame const &) override
	insert fragment_data into pose at position seq_pos More...
bool	is_compatible (SingleResidueFragData const &) const override
	check weather SRFD applies to same dofs and is of same type More...
bool	is_applicable (kinematics::MoveMap const &, Size) const override
	check whether dofs can be moved More...
std::string	type () const override
bool	apply (pose::Pose &, Size) const override
	insert fragment_data into pose at position seq_pos More...
bool	apply (kinematics::MoveMap const &, pose::Pose &, Size const ) const override
	for UpJumpSRFD this function should never be called, instead use Frame version More...
bool	apply_ss (std::string &, Size) const override
	insert fragment_data sec-struct into ss-string at position seq_pos More...
bool	steal (pose::Pose const &, Size) override
	insert fragment_data into pose at position seq_pos More...
Public Member Functions inherited from core::fragment::SingleResidueFragData
	~SingleResidueFragData () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
	SingleResidueFragData (char sequence)
	SingleResidueFragData ()
virtual bool	is_applicable (kinematics::MoveMap const &, Size intra_frame_pos, Frame const &) const
	check weather dofs can be moved More...
void	set_sequence (char const sequence)
char	sequence () const
virtual char	secstruct () const
virtual void	show (std::ostream &out) const
virtual void	read_data (std::istream &)
	Default implementation: noop. More...

Static Public Member Functions
static std::string	_static_type_name ()
Static Public Member Functions inherited from core::fragment::SingleResidueFragData
static std::string	_static_type_name ()

Private Types
typedef SingleResidueFragData	Parent

Additional Inherited Members
Protected Attributes inherited from core::fragment::SingleResidueFragData
char	sequence_

Member Typedef Documentation

typedef SingleResidueFragData core::fragment::UpJumpSRFD::Parent

private

Constructor & Destructor Documentation

core::fragment::UpJumpSRFD::UpJumpSRFD ( char  sequence = 'X' )

inline

Member Function Documentation

static std::string core::fragment::UpJumpSRFD::_static_type_name ( )

inlinestatic

Referenced by core::fragment::FragFactory::FragFactory(), and type().

bool core::fragment::UpJumpSRFD::apply ( pose::Pose &  pose, Size  intra_frame_pos, Frame const &  frame  ) const

inlineoverridevirtual

insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos );

Reimplemented from core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::apply ( kinematics::MoveMap const &  movemap, pose::Pose &  pose, Size  intra_frame_pos, Frame const &  frame  ) const

inlineoverridevirtual

insert fragment_data into pose at position given by Frame.seqpos( intra_frame_pos ) for dofs that are allowed to move in the MoveMap

Reimplemented from core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::apply ( pose::Pose &  , Size  seq_pos  ) const

inlineoverridevirtual

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::apply ( kinematics::MoveMap const &  , pose::Pose &  , Size  const  ) const

inlineoverridevirtual

for UpJumpSRFD this function should never be called, instead use Frame version

Returns

always false

Warning

will trigger a false runtime assert

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::apply_ss ( std::string &  ss, Size  intra_frame_pos, Frame const &  frame  ) const

inlineoverridevirtual

insert fragment_data sec-struct into ss-string at position seq_pos

Reimplemented from core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::apply_ss ( std::string &  , Size  seq_pos  ) const

inlineoverridevirtual

insert fragment_data sec-struct into ss-string at position seq_pos

Implements core::fragment::SingleResidueFragData.

SingleResidueFragDataOP core::fragment::UpJumpSRFD::clone ( ) const

inlineoverridevirtual

clone

Implements core::fragment::SingleResidueFragData.

SingleResidueFragDataOP core::fragment::UpJumpSRFD::create ( ) const

inlineoverridevirtual

create a new instance of this object

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::is_applicable ( kinematics::MoveMap const &  , Size  pos  ) const

inlineoverridevirtual

check whether dofs can be moved

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::is_compatible ( SingleResidueFragData const &  ) const

overridevirtual

check weather SRFD applies to same dofs and is of same type

Implements core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::steal ( pose::Pose const &  pose, Size  intra_frame_pos, Frame const &  frame  )

inlineoverridevirtual

insert fragment_data into pose at position seq_pos

Reimplemented from core::fragment::SingleResidueFragData.

bool core::fragment::UpJumpSRFD::steal ( pose::Pose const &  pose, Size  seq_pos  )

inlineoverridevirtual

insert fragment_data into pose at position seq_pos

Implements core::fragment::SingleResidueFragData.

std::string core::fragment::UpJumpSRFD::type ( ) const

inlineoverridevirtual

Reimplemented from core::fragment::SingleResidueFragData.

References _static_type_name().

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The documentation for this class was generated from the following files:

• src/core/fragment/JumpSRFD.hh
• src/core/fragment/JumpSRFD.cc