| add_long_range_damping() const | core::scoring::etable::Etable | inline |
| add_long_range_damping_ | core::scoring::etable::Etable | private |
| analytic_etable_derivatives(conformation::Atom const &at1, conformation::Atom const &at2, Real &dljatrE_ddis, Real &dljrepE_ddis, Real &dfasolE_ddis, Real &inv_d) const | core::scoring::etable::Etable | inline |
| analytic_etable_evaluation(conformation::Atom const &at1, conformation::Atom const &at2, Real &lj_atrE, Real &lj_repE, Real &fa_solE, Real &d2) const | core::scoring::etable::Etable | inline |
| analytic_lj_generic_form(Real const dis2, Real const inv_dis2, EtableParamsOnePair const &p) const | core::scoring::etable::Etable | inlineprivate |
| analytic_ljatr_cubic_poly_ramp_to_zero(Real const dis, EtableParamsOnePair const &p) const | core::scoring::etable::Etable | inlineprivate |
| analytic_ljatr_cubic_poly_ramp_to_zero_deriv(Real const dis, EtableParamsOnePair const &p) const | core::scoring::etable::Etable | inlineprivate |
| analytic_ljrep_linearized(Real const dis, EtableParamsOnePair const &p) const | core::scoring::etable::Etable | inlineprivate |
| analytic_lk_derivatives(conformation::Atom const &at1, conformation::Atom const &at2, Real &dfasolE1_ddis, Real &dfasolE2_ddis, Real &inv_d) const | core::scoring::etable::Etable | inline |
| analytic_lk_energy(conformation::Atom const &at1, conformation::Atom const &at2, Real &fa_solE1, Real &fa_solE2) const | core::scoring::etable::Etable | inline |
| analytic_lk_evaluation(int const atype1, int const atype2, EtableParamsOnePair const &p, Real const dis, Real const inv_dis2, Real &fa_solE) const | core::scoring::etable::Etable | inlineprivate |
| analytic_lk_evaluation_individual(int const atype1, int const atype2, EtableParamsOnePair const &p, Real const dis, Real const inv_dis2, Real &fa_solE1, Real &fa_solE2) const | core::scoring::etable::Etable | inlineprivate |
| analytic_parameters_ | core::scoring::etable::Etable | private |
| analytic_params_for_pair(Size atype1, Size atype2) const | core::scoring::etable::Etable | inline |
| analytic_params_for_pair(Size atype1, Size atype2) | core::scoring::etable::Etable | inlineprivate |
| assign_parameters_to_full_etables(Size atype1, Size atype2, ObjexxFCL::FArray1A< Real > ljatr, ObjexxFCL::FArray1A< Real > dljatr, ObjexxFCL::FArray1A< Real > ljrep, ObjexxFCL::FArray1A< Real > dljrep, ObjexxFCL::FArray1A< Real > fasol1, ObjexxFCL::FArray1A< Real > fasol2, ObjexxFCL::FArray1A< Real > dfasol, ObjexxFCL::FArray1A< Real > dfasol1) | core::scoring::etable::Etable | private |
| atom_set() const | core::scoring::etable::Etable | inline |
| atom_set_ | core::scoring::etable::Etable | private |
| atom_type(int const type) | core::scoring::etable::Etable | inline |
| bins_per_A2_ | core::scoring::etable::Etable | private |
| calc_etable_value(Real dis2, int atype1, int atype2, Real &atrE, Real &d_atrE, Real &repE, Real &d_repE, Real &solvE1, Real &solvE2, Real &dsolvE1, Real &dsolvE2) const | core::scoring::etable::Etable | private |
| calculate_hydrogen_atom_reach() | core::scoring::etable::Etable | private |
| calculate_nblist_distance_thresholds(EtableOptions const &options) | core::scoring::etable::Etable | private |
| calculate_normal_disbins() const | core::scoring::etable::Etable | private |
| carbon_types_ | core::scoring::etable::Etable | private |
| damp_long_range(int const normal_disbins, ObjexxFCL::FArray1A< Real > ljatr, ObjexxFCL::FArray1A< Real > dljatr, ObjexxFCL::FArray1A< Real > ljrep, ObjexxFCL::FArray1A< Real > dljrep, ObjexxFCL::FArray1A< Real > fasol1, ObjexxFCL::FArray1A< Real > fasol2, ObjexxFCL::FArray1A< Real > dfasol, ObjexxFCL::FArray1A< Real > dfasol1) | core::scoring::etable::Etable | private |
| dimension_etable_arrays() | core::scoring::etable::Etable | private |
| dljatr() const | core::scoring::etable::Etable | inline |
| dljatr_ | core::scoring::etable::Etable | private |
| dljrep() const | core::scoring::etable::Etable | inline |
| dljrep_ | core::scoring::etable::Etable | private |
| dsolv() const | core::scoring::etable::Etable | inline |
| dsolv1() const | core::scoring::etable::Etable | inlinevirtual |
| dsolv1_ | core::scoring::etable::Etable | private |
| dsolv_ | core::scoring::etable::Etable | private |
| enlarge_h_lj_wdepth_ | core::scoring::etable::Etable | private |
| epsilon() const | core::scoring::etable::Etable | inline |
| epsilon_ | core::scoring::etable::Etable | private |
| Etable(chemical::AtomTypeSetCAP atom_set_in, EtableOptions const &options, std::string const &alternate_parameter_set="") | core::scoring::etable::Etable | |
| etable_disbins() const | core::scoring::etable::Etable | inline |
| etable_disbins_ | core::scoring::etable::Etable | private |
| fa_hatr() const | core::scoring::etable::Etable | inline |
| fa_hatr_ | core::scoring::etable::Etable | private |
| fasol_cubic_poly_far_xhi() const | core::scoring::etable::Etable | inline |
| fasol_cubic_poly_far_xhi_ | core::scoring::etable::Etable | private |
| fasol_cubic_poly_far_xlo() const | core::scoring::etable::Etable | inline |
| fasol_cubic_poly_far_xlo_ | core::scoring::etable::Etable | private |
| get_bins_per_A2() const | core::scoring::etable::Etable | inline |
| get_lj_hbond_dis() const | core::scoring::etable::Etable | inline |
| get_lj_hbond_hdis() const | core::scoring::etable::Etable | inline |
| get_lj_hbond_OH_donor_dis() const | core::scoring::etable::Etable | inline |
| get_safe_max_dis2() const | core::scoring::etable::Etable | inline |
| hydrogen_interaction_cutoff2() const | core::scoring::etable::Etable | inline |
| hydrogen_interaction_cutoff2_ | core::scoring::etable::Etable | private |
| initialize_carbontypes_to_linearize_fasol() | core::scoring::etable::Etable | private |
| initialize_from_input_atomset(chemical::AtomTypeSetCAP atom_set_in) | core::scoring::etable::Etable | private |
| input_etable(ObjexxFCL::FArray3D< Real > &etable, std::string const &label, std::istream &in) | core::scoring::etable::Etable | virtual |
| interpolated_analytic_etable_evaluation(conformation::Atom const &at1, conformation::Atom const &at2, Real &lj_atrE, Real &lj_repE, Real &fa_solE, Real &d2) const | core::scoring::etable::Etable | |
| lj_hbond_dis_ | core::scoring::etable::Etable | private |
| lj_hbond_hdis_ | core::scoring::etable::Etable | private |
| lj_hbond_OH_donor_dis_ | core::scoring::etable::Etable | private |
| lj_r12_coeff_ | core::scoring::etable::Etable | private |
| lj_r6_coeff_ | core::scoring::etable::Etable | private |
| lj_radius(int const i) const | core::scoring::etable::Etable | inlinevirtual |
| lj_radius_ | core::scoring::etable::Etable | private |
| lj_sigma_ | core::scoring::etable::Etable | private |
| lj_slope_intercept() const | core::scoring::etable::Etable | inline |
| lj_slope_intercept_ | core::scoring::etable::Etable | private |
| lj_switch_dis2sigma() const | core::scoring::etable::Etable | inline |
| lj_switch_dis2sigma_ | core::scoring::etable::Etable | private |
| lj_switch_intercept_ | core::scoring::etable::Etable | private |
| lj_switch_sigma2dis_ | core::scoring::etable::Etable | private |
| lj_switch_slope_ | core::scoring::etable::Etable | private |
| lj_switch_slope_sigma2wdepth_ | core::scoring::etable::Etable | private |
| lj_switch_value2wdepth_ | core::scoring::etable::Etable | private |
| lj_use_hbond_radii() const | core::scoring::etable::Etable | inline |
| lj_use_hbond_radii_ | core::scoring::etable::Etable | private |
| lj_use_lj_deriv_slope() const | core::scoring::etable::Etable | inline |
| lj_use_lj_deriv_slope_ | core::scoring::etable::Etable | private |
| lj_use_water_radii() const | core::scoring::etable::Etable | inline |
| lj_use_water_radii_ | core::scoring::etable::Etable | private |
| lj_water_dis() const | core::scoring::etable::Etable | inline |
| lj_water_dis_ | core::scoring::etable::Etable | private |
| lj_water_hdis() const | core::scoring::etable::Etable | inline |
| lj_water_hdis_ | core::scoring::etable::Etable | private |
| lj_wdepth(int const i) const | core::scoring::etable::Etable | inline |
| lj_wdepth_ | core::scoring::etable::Etable | private |
| ljatr() const | core::scoring::etable::Etable | inline |
| ljatr_ | core::scoring::etable::Etable | private |
| ljrep() const | core::scoring::etable::Etable | inline |
| ljrep_ | core::scoring::etable::Etable | private |
| lk_coeff_ | core::scoring::etable::Etable | private |
| lk_dgfree(int const i) const | core::scoring::etable::Etable | inlinevirtual |
| lk_dgfree_ | core::scoring::etable::Etable | private |
| lk_inv_lambda2(int const i) const | core::scoring::etable::Etable | inline |
| lk_inv_lambda2_ | core::scoring::etable::Etable | private |
| lk_lambda(int const i) const | core::scoring::etable::Etable | inlinevirtual |
| lk_lambda_ | core::scoring::etable::Etable | private |
| lk_min_dis2sigma() const | core::scoring::etable::Etable | inline |
| lk_min_dis2sigma_ | core::scoring::etable::Etable | private |
| lk_min_dis2sigma_value_ | core::scoring::etable::Etable | private |
| lk_solv_energy_and_deriv(int atype1, int atype2, Real dis, Real &solvE1, Real &solvE2, Real &dsolvE1, Real &dsolvE2) const | core::scoring::etable::Etable | private |
| lk_volume(int const i) const | core::scoring::etable::Etable | inlinevirtual |
| lk_volume_ | core::scoring::etable::Etable | private |
| long_range_damping_length() const | core::scoring::etable::Etable | inline |
| long_range_damping_length_ | core::scoring::etable::Etable | private |
| make_pairenergy_table() | core::scoring::etable::Etable | private |
| max_dis() const | core::scoring::etable::Etable | inline |
| max_dis2() const | core::scoring::etable::Etable | inline |
| max_dis2_ | core::scoring::etable::Etable | private |
| max_dis_ | core::scoring::etable::Etable | private |
| max_heavy_heavy_cutoff() const | core::scoring::etable::Etable | inline |
| max_heavy_hydrogen_cutoff() const | core::scoring::etable::Etable | inline |
| max_heavy_hydrogen_cutoff_ | core::scoring::etable::Etable | private |
| max_hydrogen_hydrogen_cutoff() const | core::scoring::etable::Etable | inline |
| max_hydrogen_hydrogen_cutoff_ | core::scoring::etable::Etable | private |
| max_hydrogen_lj_radius() const | core::scoring::etable::Etable | |
| max_hydrogen_lj_radius_ | core::scoring::etable::Etable | private |
| max_non_hydrogen_lj_radius() const | core::scoring::etable::Etable | |
| max_non_hydrogen_lj_radius_ | core::scoring::etable::Etable | private |
| min_dis() const | core::scoring::etable::Etable | inline |
| min_dis2() const | core::scoring::etable::Etable | inline |
| min_dis2_ | core::scoring::etable::Etable | private |
| min_dis_ | core::scoring::etable::Etable | private |
| modify_pot_one_pair(Size atype1, Size atype2, ObjexxFCL::FArray1A< Real > ljatr, ObjexxFCL::FArray1A< Real > dljatr, ObjexxFCL::FArray1A< Real > ljrep, ObjexxFCL::FArray1A< Real > dljrep, ObjexxFCL::FArray1A< Real > fasol1, ObjexxFCL::FArray1A< Real > fasol2, ObjexxFCL::FArray1A< Real > dfasol, ObjexxFCL::FArray1A< Real > dfasol1) | core::scoring::etable::Etable | private |
| n_atomtypes() const | core::scoring::etable::Etable | inline |
| n_atomtypes_ | core::scoring::etable::Etable | private |
| nblist_dis2_cutoff_HH() const | core::scoring::etable::Etable | inlinevirtual |
| nblist_dis2_cutoff_HH_ | core::scoring::etable::Etable | private |
| nblist_dis2_cutoff_XH() const | core::scoring::etable::Etable | inlinevirtual |
| nblist_dis2_cutoff_XH_ | core::scoring::etable::Etable | private |
| nblist_dis2_cutoff_XX() const | core::scoring::etable::Etable | inlinevirtual |
| nblist_dis2_cutoff_XX_ | core::scoring::etable::Etable | private |
| no_lk_polar_desolvation_ | core::scoring::etable::Etable | private |
| output_etable(ObjexxFCL::FArray3D< Real > &etable, std::string label, std::ostream &out) | core::scoring::etable::Etable | virtual |
| precalc_etable_coefficients(ObjexxFCL::FArray2< Real > &lj_sigma, ObjexxFCL::FArray2< Real > &lj_r6_coeff, ObjexxFCL::FArray2< Real > &lj_r12_coeff, ObjexxFCL::FArray2< Real > &lj_switch_intercept, ObjexxFCL::FArray2< Real > &lj_switch_slope, ObjexxFCL::FArray1< Real > &lk_inv_lambda2, ObjexxFCL::FArray2< Real > &lk_coeff, ObjexxFCL::FArray2< Real > &lk_min_dis2sigma_value) | core::scoring::etable::Etable | private |
| proline_N_is_lk_nonpolar_ | core::scoring::etable::Etable | private |
| read_alternate_parameter_set(chemical::AtomTypeSetCAP atom_set_in, std::string const &alternate_parameter_set) | core::scoring::etable::Etable | private |
| safe_max_dis2_ | core::scoring::etable::Etable | private |
| slim_ | core::scoring::etable::Etable | private |
| smooth_etables_one_pair(Size atype1, Size atype2, ObjexxFCL::FArray1A< Real > ljatr, ObjexxFCL::FArray1A< Real > dljatr, ObjexxFCL::FArray1A< Real > ljrep, ObjexxFCL::FArray1A< Real > dljrep, ObjexxFCL::FArray1A< Real > fasol1, ObjexxFCL::FArray1A< Real > fasol2, ObjexxFCL::FArray1A< Real > dfasol, ObjexxFCL::FArray1A< Real > dfasol1) | core::scoring::etable::Etable | private |
| solv1() const | core::scoring::etable::Etable | inlinevirtual |
| solv1_ | core::scoring::etable::Etable | private |
| solv2() const | core::scoring::etable::Etable | inlinevirtual |
| solv2_ | core::scoring::etable::Etable | private |
| Wradius() const | core::scoring::etable::Etable | inline |
| Wradius_ | core::scoring::etable::Etable | private |
| zero_hydrogen_and_water_ljatr_one_pair(Size atype1, Size atype2, ObjexxFCL::FArray1A< Real > ljrep, ObjexxFCL::FArray1A< Real > ljatr, ObjexxFCL::FArray1A< Real > dljatr, ObjexxFCL::FArray1A< Real > fasol1, ObjexxFCL::FArray1A< Real > fasol2, ObjexxFCL::FArray1A< Real > dfasol, ObjexxFCL::FArray1A< Real > dfasol1) | core::scoring::etable::Etable | private |
| ~Etable() override | core::scoring::etable::Etable | |
1.8.7