protocols::pose_length_moves::NearNativeLoopCloser Member List

This is the complete list of members for protocols::pose_length_moves::NearNativeLoopCloser, including all inherited members.

allowed_loop_abegos_	protocols::pose_length_moves::NearNativeLoopCloser	private
apply(Pose &pose) override	protocols::pose_length_moves::NearNativeLoopCloser	virtual
chainAfterLoop_	protocols::pose_length_moves::NearNativeLoopCloser	private
chainBeforeLoop_	protocols::pose_length_moves::NearNativeLoopCloser	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::pose_length_moves::NearNativeLoopCloser	inlinevirtual
close_loop(Pose &pose)	protocols::pose_length_moves::NearNativeLoopCloser
closure_type_	protocols::pose_length_moves::NearNativeLoopCloser	private
combine_chains(Pose &pose)	protocols::pose_length_moves::NearNativeLoopCloser
create()	protocols::moves::Mover	virtual
create_maximum_length_pose(char resTypeBeforeLoop, char resTypeAfterLoop, core::pose::Pose pose)	protocols::pose_length_moves::NearNativeLoopCloser
create_potential_loops(core::pose::Pose pose)	protocols::pose_length_moves::NearNativeLoopCloser
extendRegion(bool towardCTerm, core::Size resStart, char neighborResType, core::Size numberAddRes, core::pose::PoseOP &poseOP)	protocols::pose_length_moves::NearNativeLoopCloser
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output() override	protocols::pose_length_moves::NearNativeLoopCloser	virtual
get_additional_output_with_rmsd(core::Real &return_rmsd)	protocols::pose_length_moves::NearNativeLoopCloser
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const override	protocols::pose_length_moves::NearNativeLoopCloser	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
ideal_	protocols::pose_length_moves::NearNativeLoopCloser	private
idealExtension_	protocols::pose_length_moves::NearNativeLoopCloser	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loopLengthRangeHigh_	protocols::pose_length_moves::NearNativeLoopCloser	private
loopLengthRangeLow_	protocols::pose_length_moves::NearNativeLoopCloser	private
max_vdw_change_	protocols::pose_length_moves::NearNativeLoopCloser	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::pose_length_moves::NearNativeLoopCloser	static
name()	protocols::moves::Mover	inlinestatic
NearNativeLoopCloser()	protocols::pose_length_moves::NearNativeLoopCloser
NearNativeLoopCloser(int resAdjustmentStartLow, int resAdjustmentStartHigh, int resAdjustmentStopLow, int resAdjustmentStopHigh, int resAdjustmentStartLow_sheet, int resAdjustmentStartHigh_sheet, int resAdjustmentStopLow_sheet, int resAdjustmentStopHigh_sheet, core::Size loopLengthRangeLow, core::Size loopLengthRangeHigh, core::Size resBeforeLoop, core::Size resAfterLoop, char chainBeforeLoop, char chainAfterLoop, core::Real rmsThreshold, core::Real max_vdw_change, bool idealExtension, bool ideal, bool output_closed, std::string closure_type="lookback", std::string allowed_loop_abegos="")	protocols::pose_length_moves::NearNativeLoopCloser
output_all_	protocols::pose_length_moves::NearNativeLoopCloser	private
output_closed_	protocols::pose_length_moves::NearNativeLoopCloser	private
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) override	protocols::pose_length_moves::NearNativeLoopCloser	virtual
Pose typedef	protocols::moves::Mover
pose_name_	protocols::pose_length_moves::NearNativeLoopCloser	private
PoseCOP typedef	protocols::moves::Mover
possibleLoops_	protocols::pose_length_moves::NearNativeLoopCloser	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::pose_length_moves::NearNativeLoopCloser	static
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
resAdjustmentStartHigh_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStartHigh_sheet_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStartLow_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStartLow_sheet_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStopHigh_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStopHigh_sheet_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStopLow_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAdjustmentStopLow_sheet_	protocols::pose_length_moves::NearNativeLoopCloser	private
resAfterLoop_	protocols::pose_length_moves::NearNativeLoopCloser	private
resBeforeLoop_	protocols::pose_length_moves::NearNativeLoopCloser	private
reset_status()	protocols::moves::Mover
rmsThreshold_	protocols::pose_length_moves::NearNativeLoopCloser	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
SSHashedFragmentStore_	protocols::pose_length_moves::NearNativeLoopCloser	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
top_outputed_	protocols::pose_length_moves::NearNativeLoopCloser	private
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline