MHCEpitopePredictorMatrix.hh File Reference

MHC epitope predictor using a position weight matrix, targeted to Propred though in theory generalizable to others. More...

#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictor.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictorMatrix.fwd.hh>
#include <core/chemical/AA.hh>
#include <utility/file/FileName.fwd.hh>
#include <utility/vector1.hh>
#include <utility/VirtualBase.hh>
#include <map>

Classes
class	core::scoring::mhc_epitope_energy::AlleleMatrix
	The scoring matrix for one specific allele. More...
class	core::scoring::mhc_epitope_energy::MHCEpitopePredictorMatrix
	An predictor based on a set of allele-specific profiles of which peptides are likely to be binders. More...

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::mhc_epitope_energy

Detailed Description

MHC epitope predictor using a position weight matrix, targeted to Propred though in theory generalizable to others.

Author

Chris Bailey-Kellogg, cbk@c.nosp@m.s.da.nosp@m.rtmou.nosp@m.th.e.nosp@m.du; Brahm Yachnin, brahm.nosp@m..yac.nosp@m.hnin@.nosp@m.rutg.nosp@m.ers.e.nosp@m.du