| backbone_for_moltenres_bbconf(core::Size moltenres, core::Size bbconf) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| backbone_for_resid_bbconf(core::Size resid, core::Size bbconf) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| bbconf_for_rotamer(core::Size rotamer_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| bbconf_for_rotamer_of_moltenres_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| bbconf_for_rotamer_on_moltenres(core::Size moltenres, core::Size rotamer_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| build_residue_vector_from_fragment(Pose &pose, core::fragment::FrameCOP frame, core::Size frag_num, utility::vector1< core::conformation::ResidueOP > &fragment_res) | protocols::flexpack::rotamer_set::FlexbbRotamerSets | protected |
| build_rotamers(Pose const &pose, ScoreFunction const &sfxn, utility::graph::Graph const &flexpack_neighbor_graph) | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| compute_one_body_energies_for_otf_ig(Pose const &pose, ScoreFunction const &sfxn, utility::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::OTFFlexbbInteractionGraph &flexbb_ig) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| compute_onebody_interactions_with_background(core::Size moltenres, Pose const &pose, ScoreFunction const &sfxn, utility::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::FlexbbInteractionGraph &flexbb_ig) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| compute_sr_one_body_energies_for_flexsets(core::Size lowermoltenres, core::Size uppermoltenres, utility::vector1< utility::vector1< core::Size > > const ®ular_representatives, utility::vector1< utility::vector1< core::Size > > const &proline_representatives, utility::vector1< utility::vector1< core::Size > > const &glycine_representatives, Pose const &pose, ScoreFunction const &sfxn, interaction_graph::OTFFlexbbInteractionGraph &flexbb_ig) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| conformations_for_flexible_segments_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| determine_res_cb_deviation(Pose const &pose, core::Size resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| dump_pdbs(core::pose::Pose const &pose, std::string const &filename_base) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| FlexbbRotamerSets(PackerTaskCOP task) | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| flexpack_neighbor_graph(Pose const &pose, ScoreFunction const &sfxn, PackerTaskCOP task) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| flexsegid_for_moltenres(core::Size molten_resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| flexsegid_for_res(core::Size resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| flexsegment_size(core::Size flex_segment_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| flexsegment_span_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| flexsegment_start_moltenresid(core::Size flex_segment_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| flexsegment_start_resid(core::Size flex_segment_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| flexsegment_stop_moltenresid(core::Size flex_segment_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| flexsegment_stop_resid(core::Size flex_segment_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| get_self_ptr() const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| get_self_ptr() | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| get_self_weak_ptr() const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| get_self_weak_ptr() | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| global_rotid_start_for_moltenres_in_bbconf(core::Size moltenres, core::Size bbconf) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| initialize_pose_for_rotsets_creation(core::pose::Pose &) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inlinevirtual |
| local_rotid_for_rotamer(core::Size rotamer_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| local_rotid_for_rotamer_on_moltenres(core::Size moltenres, core::Size rotamer_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| local_rotid_start_for_moltenres_in_bbconf(core::Size moltenres, core::Size bbconf) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| LongRangeTwoBodyEnergy typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| moltenres_2_flexseg_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| moltenres_2_resid(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| moltenres_2_resid_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| moltenres_for_rotamer(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| moltenres_for_rotamer_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| moltenres_part_of_flexsegment(core::Size molten_resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| moltenres_rotid_2_rotid(core::uint moltenres, core::uint moltenresrotid) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| nbackbone_conformations() const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| nbbconfs_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nbbconfs_for_flexseg(core::Size flex_segment_id) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| nbbconfs_for_flexseg_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nbbconfs_for_moltenres(core::Size moltenres) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| nbbconfs_for_res(core::Size resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| nflexible_segments() const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| nmolten_res() const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| nmoltenres() const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| nmoltenres_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nrotamer_offset_for_moltenres(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| nrotamers() const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| nrotamers_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nrotamers_for_moltenres(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| nrotamers_for_moltenres_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nrotamers_for_moltenres_in_bbconf(core::Size moltenres, core::Size bbconf) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| nrotamers_for_res(core::Size resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| nrotamers_for_resid_in_bbconf(core::Size resid, core::Size bbconf) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| nrotoffset_for_moltenres_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nrotoffset_for_moltenres_bbconf_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| nrots_for_moltenres_bbconf_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| num_states_per_backbone_for_moltenres(core::Size moltenres) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| PackerEnergy typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| PackerTaskCOP typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| Pose typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| precompute_all_energies(Pose const &pose, ScoreFunction const &sfxn, utility::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::PrecomputedFlexbbInteractionGraph &flexbb_ig) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| precompute_energies(Pose const &pose, ScoreFunction const &sfxn, utility::graph::GraphCOP flexpack_neighbor_graph, interaction_graph::FlexbbInteractionGraph &flexbb_ig) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| res_for_rotamer(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| res_part_of_flexsegment(core::Size resid) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| resid_2_moltenres(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| resid_2_moltenres_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| rotamer(core::uint) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| rotamer_for_moltenres(core::uint moltenres_id, core::uint rotamerid) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| rotamer_for_residue(core::Size resid, core::Size rotindex_on_residue) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| rotamers_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| rotamers_on_same_bbconf(core::Size moltenres, core::Size rot1, core::Size rot2) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | inline |
| RotamerSetsBase() | core::pack_basic::RotamerSetsBase | |
| rotid_on_moltenresidue(core::uint rotid) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| rotset_for_moltenres(core::Size molten_resid, core::Size bbconf=1) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| rotset_for_residue(core::Size resid, core::Size bbconf=1) const | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| ScoreFunction typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| set_frames(Pose const &pose, utility::vector1< core::fragment::FrameCOP > const &frames) | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| show(std::ostream &out) const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| Size typedef | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| task_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| total_residue() const override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | virtual |
| total_residue_ | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| update_offset_data() | protocols::flexpack::rotamer_set::FlexbbRotamerSets | private |
| ~FlexbbRotamerSets() override | protocols::flexpack::rotamer_set::FlexbbRotamerSets | |
| ~RotamerSetsBase() override | core::pack_basic::RotamerSetsBase | |
1.8.7