protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover Member List

This is the complete list of members for protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover, including all inherited members.

apply(core::pose::Pose &pose) override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	virtual
calculate_error_twist(std::pair< numeric::xyzVector< core::Real >, numeric::xyzVector< core::Real > > target, std::pair< numeric::xyzVector< core::Real >, numeric::xyzVector< core::Real > > current)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	virtual
closure_cycles_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
closure_success_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
create()	protocols::moves::Mover	virtual
create_default_movemap(protocols::loops::Loop loop)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
delta_euler_angle_max_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
dq_max_allowed_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
err_lin_allowed_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
err_rot_allowed_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
free_residues_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
fresh_instance() const override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_allowed_norm_lin()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
get_allowed_norm_rot()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_dq_max_allowed()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_loop()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
get_max_cycles()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
get_name() const override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	virtual
get_native_pose() const	protocols::moves::Mover
get_self_ptr() const	protocols::moves::Mover	inline
get_self_ptr()	protocols::moves::Mover	inline
get_self_weak_ptr() const	protocols::moves::Mover	inline
get_self_weak_ptr()	protocols::moves::Mover	inline
get_type() const	protocols::moves::Mover	inline
icoor_targets_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init_apply(core::pose::Pose &pose)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
init_constructor(protocols::loops::Loop const &loop, core::kinematics::MoveMapCOP const &mm)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
jacobian_chain_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
JacobiLoopClosureMover()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
JacobiLoopClosureMover(JacobiLoopClosureMover const &src)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
JacobiLoopClosureMover(protocols::loops::Loop const &loop)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
JacobiLoopClosureMover(protocols::loops::Loop const &loop, core::kinematics::MoveMapCOP const &mm)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
JacobiLoopClosureMover(core::kinematics::jacobian::SeriesJacobiansOP const jacobian_chain)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
last_closure_cycles()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
last_closure_success()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
max_cycles_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
movemap_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
mover_name()	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	static
name()	protocols::moves::Mover	inlinestatic
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &) override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
prepare_foldtree(core::pose::Pose &pose)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
provide_citation_info(basic::citation_manager::CitationCollectionList &) const	protocols::moves::Mover	virtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	static
ref_bb_atom_id_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inlinevirtual
set_dq_max_allowed(core::Real dq_max_allowed)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
set_error_norms(core::Real error_norm_rot, core::Real error_norm_lin)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_loop(protocols::loops::Loop const &new_loop)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
set_max_cycles(core::Size max_cycles)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
set_movemap(core::kinematics::MoveMapOP const new_mm)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_type(std::string const &setting)	protocols::moves::Mover	inline
set_verbose(bool setting)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	inline
show(std::ostream &output=std::cout) const override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	virtual
store_target_icoors(core::pose::Pose const &pose)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
target_bb_atom_ids_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type(const std::string &type_in)	protocols::moves::Mover	inline
type() const	protocols::moves::Mover	inline
update_current(core::pose::Pose const &pose)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
update_target(core::pose::Pose const &pose)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
verbose_	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
weigh_columns_inversely_squared(numeric::MathMatrix< core::Real > const &)	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover	private
~JacobiLoopClosureMover() override	protocols::loops::loop_closure::jacobi::JacobiLoopClosureMover