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protocols::analysis::InterfaceAnalyzerMover Member List

This is the complete list of members for protocols::analysis::InterfaceAnalyzerMover, including all inherited members.

add_score_info_to_pose(core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMover
apply(core::pose::Pose &pose) overrideprotocols::analysis::InterfaceAnalyzerMovervirtual
apply_const(core::pose::Pose const &pose)protocols::analysis::InterfaceAnalyzerMovervirtual
BuriedUnsatisfiedPolars_protocols::analysis::InterfaceAnalyzerMoverprivate
calc_centroid_dG(core::pose::Pose const &complex_pose, core::pose::Pose const &separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivate
calc_hbond_sasaE(core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMoverprivate
calc_hbond_sasaE_protocols::analysis::InterfaceAnalyzerMoverprivate
calc_interface_to_surface_fraction(core::pose::Pose const &separated_pose, const utility::vector1< core::Real > &separated_sasa)protocols::analysis::InterfaceAnalyzerMoverprivate
calc_per_residue_and_regional_data(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivate
calc_per_residue_dG(core::pose::Pose &complexed_pose, const utility::vector1< core::Real > &separated_energy, const utility::vector1< core::Real > &complexed_energy)protocols::analysis::InterfaceAnalyzerMoverprivate
calc_per_residue_dSASA(const core::pose::Pose &complexed_pose, const utility::vector1< core::Real > &separated_sasa, const utility::vector1< core::Real > &complexed_sasa)protocols::analysis::InterfaceAnalyzerMoverprivate
calc_per_residue_dSASA_general(const core::Size resnum, const core::pose::Pose &complexed_pose, const core::Real separated_sasa, const core::Real complexed_sasa, utility::vector1< core::Real > &regional)protocols::analysis::InterfaceAnalyzerMoverprivate
calcs_ready_protocols::analysis::InterfaceAnalyzerMoverprivate
chain1_protocols::analysis::InterfaceAnalyzerMoverprivate
chain2_protocols::analysis::InterfaceAnalyzerMoverprivate
chain_groups_protocols::analysis::InterfaceAnalyzerMoverprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::analysis::InterfaceAnalyzerMovervirtual
compute_interface_delta_hbond_unsat(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
compute_interface_delta_hbond_unsat_protocols::analysis::InterfaceAnalyzerMoverprivate
compute_interface_energy(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
compute_interface_energy_protocols::analysis::InterfaceAnalyzerMoverprivate
compute_interface_packstat(core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
compute_interface_sc(core::Size &interface_jump, core::pose::Pose const &complexed_pose)protocols::analysis::InterfaceAnalyzerMoverprivate
compute_interface_sc_protocols::analysis::InterfaceAnalyzerMoverprivate
compute_packstat_protocols::analysis::InterfaceAnalyzerMoverprivate
compute_separated_sasa(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
compute_separated_sasa_protocols::analysis::InterfaceAnalyzerMoverprivate
create()protocols::moves::Movervirtual
data_protocols::analysis::InterfaceAnalyzerMoverprivate
detect_disulfide_in_separated_pose_protocols::analysis::InterfaceAnalyzerMoverprivate
dock_chains_protocols::analysis::InterfaceAnalyzerMoverprivate
downstream_chains_protocols::analysis::InterfaceAnalyzerMoverprivate
explicit_constructor_protocols::analysis::InterfaceAnalyzerMoverprivate
fixed_chain_strings_protocols::analysis::InterfaceAnalyzerMoverprivate
fixed_chains_protocols::analysis::InterfaceAnalyzerMoverprivate
fresh_instance() const overrideprotocols::analysis::InterfaceAnalyzerMovervirtual
get_additional_output()protocols::moves::Movervirtual
get_all_data()protocols::analysis::InterfaceAnalyzerMoverinline
get_all_per_residue_data()protocols::analysis::InterfaceAnalyzerMoverinline
get_centroid_dG()protocols::analysis::InterfaceAnalyzerMover
get_chain_groups()protocols::analysis::InterfaceAnalyzerMover
get_complex_energy()protocols::analysis::InterfaceAnalyzerMover
get_complexed_sasa()protocols::analysis::InterfaceAnalyzerMover
get_crossterm_interface_energy()protocols::analysis::InterfaceAnalyzerMover
get_crossterm_interface_energy_ratio()protocols::analysis::InterfaceAnalyzerMover
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_fixed_chains()protocols::analysis::InterfaceAnalyzerMover
get_gly_interface_energy()protocols::analysis::InterfaceAnalyzerMover
get_input_pose() const protocols::moves::Mover
get_interface_delta_hbond_unsat()protocols::analysis::InterfaceAnalyzerMover
get_interface_delta_sasa()protocols::analysis::InterfaceAnalyzerMover
get_interface_dG() const protocols::analysis::InterfaceAnalyzerMover
get_interface_packstat()protocols::analysis::InterfaceAnalyzerMover
get_interface_set()protocols::analysis::InterfaceAnalyzerMover
get_last_move_status() const protocols::moves::Mover
get_multichain_constructor()protocols::analysis::InterfaceAnalyzerMover
get_name() const overrideprotocols::analysis::InterfaceAnalyzerMovervirtual
get_native_pose() const protocols::moves::Mover
get_num_interface_residues()protocols::analysis::InterfaceAnalyzerMover
get_pack_input()protocols::analysis::InterfaceAnalyzerMover
get_per_residue_energy()protocols::analysis::InterfaceAnalyzerMover
get_pymol_sel_hbond_unsat()protocols::analysis::InterfaceAnalyzerMover
get_pymol_sel_interface()protocols::analysis::InterfaceAnalyzerMover
get_pymol_sel_packing()protocols::analysis::InterfaceAnalyzerMover
get_scorefile_reporting_prefix() const protocols::analysis::InterfaceAnalyzerMover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_separated_interface_energy()protocols::analysis::InterfaceAnalyzerMover
get_separated_interface_energy_ratio()protocols::analysis::InterfaceAnalyzerMover
get_side1_nres()protocols::analysis::InterfaceAnalyzerMoverinline
get_side1_score()protocols::analysis::InterfaceAnalyzerMoverinline
get_side2_nres()protocols::analysis::InterfaceAnalyzerMoverinline
get_side2_score()protocols::analysis::InterfaceAnalyzerMoverinline
get_total_Hbond_E()protocols::analysis::InterfaceAnalyzerMover
get_type() const protocols::moves::Moverinline
get_use_centroid_dG() const protocols::analysis::InterfaceAnalyzerMover
group_pair typedefprotocols::analysis::InterfaceAnalyzerMover
group_set typedefprotocols::analysis::InterfaceAnalyzerMover
ignored_chains_protocols::analysis::InterfaceAnalyzerMoverprivate
include_residue_protocols::analysis::InterfaceAnalyzerMoverprivate
included_nres_protocols::analysis::InterfaceAnalyzerMoverprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init_data(const core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMoverprivate
init_on_new_input(const core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMover
init_per_residue_data(core::pose::Pose const &pose)protocols::analysis::InterfaceAnalyzerMoverprivate
interface_jump_protocols::analysis::InterfaceAnalyzerMoverprivate
interface_set_protocols::analysis::InterfaceAnalyzerMoverprivate
InterfaceAnalyzerMover(core::Size interface_jump=1, bool const tracer=false, core::scoring::ScoreFunctionCOP sf=nullptr, bool compute_packstat=false, bool pack_input=false, bool pack_separated=false, bool use_jobname=true, bool detect_disulfide_in_separated_pose=true)protocols::analysis::InterfaceAnalyzerMover
InterfaceAnalyzerMover(std::set< int > const &fixed_chains, bool const tracer=false, core::scoring::ScoreFunctionCOP sf=nullptr, bool compute_packstat=false, bool pack_input=false, bool pack_separated=false, bool use_jobname=true, bool detect_disulfide_in_separated_pose=true)protocols::analysis::InterfaceAnalyzerMover
InterfaceAnalyzerMover(std::string dock_chains, bool const tracer=false, core::scoring::ScoreFunctionCOP sf=nullptr, bool compute_packstat=false, bool pack_input=false, bool pack_separated=false, bool use_jobname=true, bool detect_disulfide_in_separated_pose=true)protocols::analysis::InterfaceAnalyzerMover
InterfaceDeltaEnergetics_protocols::analysis::InterfaceAnalyzerMoverprivate
InterfaceNeighborDefinition_protocols::analysis::InterfaceAnalyzerMoverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
ligand_chain_protocols::analysis::InterfaceAnalyzerMoverprivate
make_interface_set(core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
make_multichain_interface_set(core::pose::Pose &Pose, std::set< int > &fixed_chains)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
make_separated_pose(core::pose::Pose &pose, core::Size interface_jump, core::Size step_size=1000)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
make_separated_pose(core::pose::Pose &pose, std::set< core::Size > const &moving_chains, core::Size step_size=1000)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::analysis::InterfaceAnalyzerMoverstatic
mut_to_gly(core::pose::Pose complex_pose, core::pose::Pose separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivate
name()protocols::moves::Moverinlinestatic
NumberHBonds_protocols::analysis::InterfaceAnalyzerMoverprivate
one_group typedefprotocols::analysis::InterfaceAnalyzerMover
pack_input_protocols::analysis::InterfaceAnalyzerMoverprivate
pack_rounds_protocols::analysis::InterfaceAnalyzerMoverprivate
pack_separated_protocols::analysis::InterfaceAnalyzerMoverprivate
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) overrideprotocols::analysis::InterfaceAnalyzerMovervirtual
per_residue_data_protocols::analysis::InterfaceAnalyzerMoverprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
posename_protocols::analysis::InterfaceAnalyzerMoverprivate
posename_base_protocols::analysis::InterfaceAnalyzerMoverprivate
print_pymol_selection_of_hbond_unsat(core::pose::Pose &pose, utility::vector1< core::id::AtomID > delta_unsat_hbond_atid_vector)protocols::analysis::InterfaceAnalyzerMoverprivate
print_pymol_selection_of_interface_residues(core::pose::Pose const &pose, std::set< core::Size > const &interface_set)protocols::analysis::InterfaceAnalyzerMoverprivate
print_pymol_selection_of_packing(core::pose::Pose const &pose, utility::vector1< core::Real > &interface_pack_scores)protocols::analysis::InterfaceAnalyzerMoverprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::analysis::InterfaceAnalyzerMoverstatic
register_calculators()protocols::analysis::InterfaceAnalyzerMoverprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const overrideprotocols::analysis::InterfaceAnalyzerMoverinlinevirtual
reinitialize_for_new_input() const overrideprotocols::analysis::InterfaceAnalyzerMoverinlinevirtual
reorder_foldtree_find_jump(core::pose::Pose &pose, std::set< int > &fixed_chains)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
report_data()protocols::analysis::InterfaceAnalyzerMovervirtual
reset_status()protocols::moves::Mover
Sasa_protocols::analysis::InterfaceAnalyzerMoverprivate
score_data_protocols::analysis::InterfaceAnalyzerMoverprivate
score_separated_chains(core::pose::Pose &complexed_pose, core::pose::Pose &separated_pose)protocols::analysis::InterfaceAnalyzerMoverprivatevirtual
scorefile_column_name(std::string const &base_name) const protocols::analysis::InterfaceAnalyzerMoverprivate
scorefile_reporting_prefix_protocols::analysis::InterfaceAnalyzerMoverprivate
set_calc_dSASA(bool calc_dSASA)protocols::analysis::InterfaceAnalyzerMoverinline
set_calc_hbond_sasaE(bool const calc_hbond_sasaE)protocols::analysis::InterfaceAnalyzerMoverinline
set_compute_interface_delta_hbond_unsat(bool const IDHU)protocols::analysis::InterfaceAnalyzerMoverinline
set_compute_interface_energy(bool const iface_en)protocols::analysis::InterfaceAnalyzerMoverinline
set_compute_interface_sc(bool const compute_interface_sc)protocols::analysis::InterfaceAnalyzerMoverinline
set_compute_packstat(bool const compute_packstat)protocols::analysis::InterfaceAnalyzerMover
set_compute_separated_sasa(bool const compute_separated_sasa)protocols::analysis::InterfaceAnalyzerMoverinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_defaults()protocols::analysis::InterfaceAnalyzerMover
set_detect_disulfide_in_separated_pose(bool const detect_disulfide_in_separated_pose)protocols::analysis::InterfaceAnalyzerMoverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_interface(std::string const &interface)protocols::analysis::InterfaceAnalyzerMover
set_interface_jump(core::Size const interface_jump)protocols::analysis::InterfaceAnalyzerMover
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_pack_input(bool const pack_input)protocols::analysis::InterfaceAnalyzerMover
set_pack_rounds(core::Size pack_rounds)protocols::analysis::InterfaceAnalyzerMoverinline
set_pack_separated(bool const pack_separated)protocols::analysis::InterfaceAnalyzerMover
set_pose_info(core::pose::Pose const &pose)protocols::analysis::InterfaceAnalyzerMoverprivate
set_scorefile_reporting_prefix(std::string const &prefix)protocols::analysis::InterfaceAnalyzerMover
set_scorefunction(core::scoring::ScoreFunctionCOP sf)protocols::analysis::InterfaceAnalyzerMover
set_skip_reporting(bool const skip_reporting)protocols::analysis::InterfaceAnalyzerMoverinline
set_type(std::string const &setting)protocols::moves::Moverinline
set_use_centroid_dG(bool const use_centroid)protocols::analysis::InterfaceAnalyzerMover
set_use_jobname(bool const use_jobname)protocols::analysis::InterfaceAnalyzerMover
set_use_resfile(bool const use_resfile)protocols::analysis::InterfaceAnalyzerMover
set_use_tracer(bool const tracer)protocols::analysis::InterfaceAnalyzerMover
setup_for_dock_chains(core::pose::Pose &pose, std::string dock_chains)protocols::analysis::InterfaceAnalyzerMoverprivate
setup_score_data()protocols::analysis::InterfaceAnalyzerMoverprivate
setup_scorefxn()protocols::analysis::InterfaceAnalyzerMoverprivate
setup_task(core::pose::Pose &pose)protocols::analysis::InterfaceAnalyzerMoverprivate
sf_protocols::analysis::InterfaceAnalyzerMoverprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
skip_reporting_protocols::analysis::InterfaceAnalyzerMoverprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
tracer_protocols::analysis::InterfaceAnalyzerMoverprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
upstream_chains_protocols::analysis::InterfaceAnalyzerMoverprivate
use_centroid_protocols::analysis::InterfaceAnalyzerMoverprivate
use_jobname_protocols::analysis::InterfaceAnalyzerMoverprivate
use_resfile_protocols::analysis::InterfaceAnalyzerMoverprivate
~InterfaceAnalyzerMover() overrideprotocols::analysis::InterfaceAnalyzerMover
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