protocols::stepwise::monte_carlo::mover::StepWiseMove Class Reference

#include <StepWiseMove.hh>

Inheritance diagram for protocols::stepwise::monte_carlo::mover::StepWiseMove:

Public Member Functions
	StepWiseMove ()
StepWiseMoveOP	clone () const
	StepWiseMove (MoveElement const &move_element, Attachments const &attachments, MoveType const &move_type)
	StepWiseMove (MoveElement const &move_element, Attachments const &attachments, MoveType const &move_type, std::string const &submotif_tag)
	StepWiseMove (MoveElement const &move_element, Attachment const &attachment, MoveType const &move_type)
	StepWiseMove (core::Size const moving_res, Attachments const &attachments, MoveType const &move_type)
	StepWiseMove (core::Size const moving_res, Attachment const &attachment, MoveType const &move_type)
	StepWiseMove (utility::vector1< std::string > const &swa_move_string_vector, core::pose::full_model_info::FullModelParametersCOP full_model_parameters=nullptr)
	StepWiseMove (std::string const &swa_move_string, core::pose::full_model_info::FullModelParametersCOP full_model_parameters=nullptr)
void	set_move_element (MoveElement const &setting)
MoveElement	move_element () const
core::Size	moving_res () const
core::Size	attached_res () const
AttachmentType	attachment_type () const
void	set_attachments (Attachments const &setting)
Attachments	attachments () const
void	set_move_type (MoveType const &setting)
MoveType	move_type () const
bool	is_jump ()
std::string const &	submotif_tag () const

Private Attributes
MoveElement	move_element_
Attachments	attachments_
MoveType	move_type_
std::string	submotif_tag_

Friends
bool	operator== (StepWiseMove const &a, StepWiseMove const &b)
bool	operator!= (StepWiseMove const &a, StepWiseMove const &b)

Constructor & Destructor Documentation

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove

(

)

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	MoveElement const &	move_element,
		Attachments const &	attachments,
		MoveType const &	move_type
	)

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	MoveElement const &	move_element,
		Attachments const &	attachments,
		MoveType const &	move_type,
		std::string const &	submotif_tag
	)

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	MoveElement const &	move_element,
		Attachment const &	attachment,
		MoveType const &	move_type
	)

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	core::Size const	moving_res,
		Attachments const &	attachments,
		MoveType const &	move_type
	)

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	core::Size const	moving_res,
		Attachment const &	attachment,
		MoveType const &	move_type
	)

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	utility::vector1< std::string > const &	swa_move_string_vector,
		core::pose::full_model_info::FullModelParametersCOP	full_model_parameters = nullptr
	)

References attachment_type(), protocols::stepwise::monte_carlo::mover::attachment_type_from_string(), attachments_, protocols::stepwise::monte_carlo::mover::BOND_TO_NEXT, protocols::stepwise::monte_carlo::mover::BOND_TO_PREVIOUS, move_element_, move_type_, protocols::stepwise::monte_carlo::mover::move_type_from_string(), protocols::stepwise::monte_carlo::mover::RESAMPLE_INTERNAL_LOCAL, protocols::stepwise::monte_carlo::mover::SUBMOTIF, and submotif_tag_.

protocols::stepwise::monte_carlo::mover::StepWiseMove::StepWiseMove	(	std::string const &	swa_move_string,
		core::pose::full_model_info::FullModelParametersCOP	full_model_parameters = nullptr
	)

produces the swa_move_string_vector, a very idiosyncratic format, from the type of string output produced by operator<<

References attachment_type(), protocols::stepwise::monte_carlo::mover::attachment_type_from_string(), attachments_, protocols::stepwise::monte_carlo::mover::BOND_TO_NEXT, protocols::stepwise::monte_carlo::mover::BOND_TO_PREVIOUS, move_element_, move_type_, protocols::stepwise::monte_carlo::mover::move_type_from_string(), protocols::stepwise::monte_carlo::mover::RESAMPLE_INTERNAL_LOCAL, protocols::stepwise::monte_carlo::mover::SUBMOTIF, and submotif_tag_.

Member Function Documentation

Size protocols::stepwise::monte_carlo::mover::StepWiseMove::attached_res

(

)

const

References attachments_.

Referenced by protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::apply(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::filter_pose_order(), protocols::stepwise::monte_carlo::mover::AddMover::get_add_res(), protocols::stepwise::monte_carlo::mover::ResampleMover::get_remodel_res(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::just_simple_cycles(), and protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::reverse_add_move().

AttachmentType protocols::stepwise::monte_carlo::mover::StepWiseMove::attachment_type

(

)

const

References attachments_.

Referenced by protocols::stepwise::monte_carlo::mover::AddMover::append_other_pose(), protocols::stepwise::monte_carlo::mover::AddMover::append_residue(), protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::apply(), protocols::stepwise::monte_carlo::mover::ResampleMover::apply(), protocols::stepwise::monte_carlo::mover::AddMover::do_append(), protocols::stepwise::monte_carlo::mover::AddMover::get_add_res(), is_jump(), protocols::stepwise::monte_carlo::mover::AddMover::prepend_other_pose(), protocols::stepwise::monte_carlo::mover::AddMover::prepend_residue(), protocols::stepwise::monte_carlo::mover::AddMover::setup_initial_jump(), and StepWiseMove().

Attachments protocols::stepwise::monte_carlo::mover::StepWiseMove::attachments ( ) const

inline

References attachments_.

Referenced by protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::apply(), protocols::stepwise::monte_carlo::mover::ResampleMover::apply(), protocols::stepwise::monte_carlo::mover::ensure_appropriate_foldtree_for_move(), protocols::stepwise::monte_carlo::mover::ResampleMover::get_remodel_res(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_submotif_add_moves(), and protocols::stepwise::monte_carlo::mover::operator<<().

StepWiseMoveOP protocols::stepwise::monte_carlo::mover::StepWiseMove::clone

(

)

const

bool protocols::stepwise::monte_carlo::mover::StepWiseMove::is_jump ( )

inline

References attachment_type(), protocols::stepwise::monte_carlo::mover::JUMP_DOCK, protocols::stepwise::monte_carlo::mover::JUMP_TO_NEXT_IN_CHAIN, and protocols::stepwise::monte_carlo::mover::JUMP_TO_PREV_IN_CHAIN.

Referenced by protocols::stepwise::monte_carlo::mover::AddMover::append_other_pose(), protocols::stepwise::monte_carlo::mover::AddMover::append_residue(), protocols::stepwise::monte_carlo::mover::AddMover::prepend_other_pose(), protocols::stepwise::monte_carlo::mover::AddMover::prepend_residue(), and protocols::stepwise::monte_carlo::mover::AddMover::setup_initial_torsions().

MoveElement protocols::stepwise::monte_carlo::mover::StepWiseMove::move_element ( ) const

inline

References move_element_.

Referenced by protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::apply(), protocols::stepwise::monte_carlo::mover::ResampleMover::apply(), protocols::stepwise::monte_carlo::mover::ensure_appropriate_foldtree_for_move(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_actual_moving_res(), protocols::stepwise::monte_carlo::mover::AddMover::get_add_res(), protocols::stepwise::monte_carlo::mover::ResampleMover::get_remodel_res(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::just_simple_cycles(), protocols::stepwise::monte_carlo::mover::operator<<(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::reverse_delete_move(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::reverse_move(), and protocols::stepwise::monte_carlo::mover::set_up_params_for_move().

MoveType protocols::stepwise::monte_carlo::mover::StepWiseMove::move_type ( ) const

inline

References move_type_.

Referenced by protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::apply(), protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::apply(), protocols::stepwise::monte_carlo::StepWiseMonteCarlo::apply(), protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::apply(), protocols::stepwise::monte_carlo::mover::ResampleMover::apply(), protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::do_test_move(), protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::do_the_move(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::filter_pose_order(), protocols::stepwise::monte_carlo::get_move_type_string(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::just_simple_cycles(), protocols::stepwise::monte_carlo::mover::operator<<(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::reverse_move(), protocols::stepwise::monte_carlo::mover::set_up_params_for_move(), and protocols::stepwise::monte_carlo::mover::StepWiseMasterMover::test_all_moves_recursively().

Size protocols::stepwise::monte_carlo::mover::StepWiseMove::moving_res

(

)

const

References move_element_.

Referenced by protocols::stepwise::monte_carlo::mover::VaryLoopLengthMover::apply(), protocols::stepwise::monte_carlo::mover::ResampleMover::apply(), protocols::stepwise::monte_carlo::mover::check_for_connections_for_all_submotif_residues(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::filter_pose_order(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::get_submotif_add_moves(), protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::just_simple_cycles(), protocols::stepwise::monte_carlo::mover::name_from_move(), and protocols::stepwise::monte_carlo::mover::StepWiseMoveSelector::reverse_add_move().

void protocols::stepwise::monte_carlo::mover::StepWiseMove::set_attachments ( Attachments const &  setting )

inline

References attachments_.

void protocols::stepwise::monte_carlo::mover::StepWiseMove::set_move_element ( MoveElement const &  setting )

inline

References move_element_.

void protocols::stepwise::monte_carlo::mover::StepWiseMove::set_move_type ( MoveType const &  setting )

inline

References move_type_.

std::string const& protocols::stepwise::monte_carlo::mover::StepWiseMove::submotif_tag ( ) const

inline

References submotif_tag_.

Referenced by protocols::stepwise::monte_carlo::mover::AddOrDeleteMover::apply(), and protocols::stepwise::monte_carlo::mover::operator<<().

Friends And Related Function Documentation

bool operator!= ( StepWiseMove const &  a, StepWiseMove const &  b  )

friend

bool operator== ( StepWiseMove const &  a, StepWiseMove const &  b  )

friend

Member Data Documentation

Attachments protocols::stepwise::monte_carlo::mover::StepWiseMove::attachments_

private

Referenced by attached_res(), attachment_type(), attachments(), protocols::stepwise::monte_carlo::mover::operator==(), set_attachments(), and StepWiseMove().

MoveElement protocols::stepwise::monte_carlo::mover::StepWiseMove::move_element_

private

Referenced by move_element(), moving_res(), protocols::stepwise::monte_carlo::mover::operator==(), set_move_element(), and StepWiseMove().

MoveType protocols::stepwise::monte_carlo::mover::StepWiseMove::move_type_

private

Referenced by move_type(), protocols::stepwise::monte_carlo::mover::operator==(), set_move_type(), and StepWiseMove().

std::string protocols::stepwise::monte_carlo::mover::StepWiseMove::submotif_tag_

private

Referenced by protocols::stepwise::monte_carlo::mover::operator==(), StepWiseMove(), and submotif_tag().

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The documentation for this class was generated from the following files:

• src/protocols/stepwise/monte_carlo/mover/StepWiseMove.hh
• src/protocols/stepwise/monte_carlo/mover/StepWiseMove.cc