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protocols::antibody::AntibodyModelerProtocol Member List

This is the complete list of members for protocols::antibody::AntibodyModelerProtocol, including all inherited members.

ab_info_protocols::antibody::AntibodyModelerProtocolprivate
AntibodyModelerProtocol()protocols::antibody::AntibodyModelerProtocol
apply(core::pose::Pose &pose) overrideprotocols::antibody::AntibodyModelerProtocolvirtual
auto_h3_constraint_protocols::antibody::AntibodyModelerProtocolprivate
benchmark_protocols::antibody::AntibodyModelerProtocolprivate
cdr_constraint_protocols::antibody::AntibodyModelerProtocolprivate
cen_cst_protocols::antibody::AntibodyModelerProtocolprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::antibody::AntibodyModelerProtocolvirtual
constrain_vlvh_qq_protocols::antibody::AntibodyModelerProtocolprivate
create()protocols::moves::Movervirtual
cst_weight_protocols::antibody::AntibodyModelerProtocolprivate
display_constraint_residues(core::pose::Pose &pose)protocols::antibody::AntibodyModelerProtocol
dock_scorefxn_highres_protocols::antibody::AntibodyModelerProtocolprivate
echo_metrics_to_output(core::pose::Pose &pose)protocols::antibody::AntibodyModelerProtocolprivate
extend_h3_before_modeling_protocols::antibody::AntibodyModelerProtocolprivate
finalize_setup(core::pose::Pose &pose)protocols::antibody::AntibodyModelerProtocolprivate
flags_and_objects_are_in_sync_protocols::antibody::AntibodyModelerProtocolprivate
fresh_instance() const protocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_cdr_h3_loop()protocols::antibody::AntibodyModelerProtocolprivate
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::antibody::AntibodyModelerProtocolvirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
h3_loop_csts_hr_protocols::antibody::AntibodyModelerProtocolprivate
h3_loop_csts_lr_protocols::antibody::AntibodyModelerProtocolprivate
high_cst_protocols::antibody::AntibodyModelerProtocolprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
init()protocols::antibody::AntibodyModelerProtocolprivate
init_from_options()protocols::antibody::AntibodyModelerProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
LH_repulsive_ramp_protocols::antibody::AntibodyModelerProtocolprivate
loop_scorefxn_centroid_protocols::antibody::AntibodyModelerProtocolprivate
loop_scorefxn_highres_protocols::antibody::AntibodyModelerProtocolprivate
middle_pack_min_protocols::antibody::AntibodyModelerProtocolprivate
model_h3_protocols::antibody::AntibodyModelerProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
operator<<(std::ostream &out, const AntibodyModelerProtocol &ab_m)protocols::antibody::AntibodyModelerProtocolfriend
pack_scorefxn_protocols::antibody::AntibodyModelerProtocolprivate
packonly_after_graft_protocols::antibody::AntibodyModelerProtocolprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
refine_h3_protocols::antibody::AntibodyModelerProtocolprivate
register_options()protocols::antibody::AntibodyModelerProtocolstatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rt_min_protocols::antibody::AntibodyModelerProtocolprivate
run_snugdock_protocols::antibody::AntibodyModelerProtocolprivate
sc_min_protocols::antibody::AntibodyModelerProtocolprivate
set_auto_h3_constraint(bool const setting)protocols::antibody::AntibodyModelerProtocolinline
set_BenchMark(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_constrain_vlvh_qq(bool const setting)protocols::antibody::AntibodyModelerProtocolinline
set_cst_weight(core::Real const cst_weight)protocols::antibody::AntibodyModelerProtocolinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_default()protocols::antibody::AntibodyModelerProtocol
set_extend_h3_before_modeling(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_h3_loop_csts_hr(bool const setting)protocols::antibody::AntibodyModelerProtocolinline
set_h3_loop_csts_lr(bool const setting)protocols::antibody::AntibodyModelerProtocolinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_middle_pack_min(bool middle_pack_min)protocols::antibody::AntibodyModelerProtocolinline
set_ModelH3(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_packonly_after_graft(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_refine_h3(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_rt_min(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_sc_min(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_SnugFit(bool setting)protocols::antibody::AntibodyModelerProtocolinline
set_type(std::string const &setting)protocols::moves::Moverinline
setup_objects()protocols::antibody::AntibodyModelerProtocolprivate
show(std::ostream &out=std::cout) const overrideprotocols::antibody::AntibodyModelerProtocolvirtual
snugfit_protocols::antibody::AntibodyModelerProtocolprivate
Strings typedefprotocols::moves::Mover
sync_objects_with_flags()protocols::antibody::AntibodyModelerProtocol
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline
user_defined_protocols::antibody::AntibodyModelerProtocolprivate
~AntibodyModelerProtocol() overrideprotocols::antibody::AntibodyModelerProtocol