protocols::rotamer_recovery::RRProtocolReferenceStructure Class Reference

#include <RRProtocolReferenceStructure.hh>

Inheritance diagram for protocols::rotamer_recovery::RRProtocolReferenceStructure:

Public Member Functions
	RRProtocolReferenceStructure ()
	RRProtocolReferenceStructure (core::pose::PoseCOP reference_pose)
	~RRProtocolReferenceStructure () override
	RRProtocolReferenceStructure (RRProtocolReferenceStructure const &src)
std::string	get_name () const override
std::string	get_parameters () const override
void	reference_structure (core::pose::PoseCOP reference_pose)
void	parse_attributes_from_tag (basic::datacache::DataMap const &dm, utility::tag::TagCOP tag) override
	As the RRProtocol is being read in. More...
void	run (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose, core::scoring::ScoreFunction const &, core::pack::task::PackerTask const &packer_task) override
Public Member Functions inherited from protocols::rotamer_recovery::RRProtocol
	~RRProtocol () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

Static Public Member Functions
static void	append_attributes (utility::tag::AttributeList &attlist)

Private Attributes
core::pose::PoseCOP	reference_pose_

Additional Inherited Members
Protected Member Functions inherited from protocols::rotamer_recovery::RRProtocol
bool	measure_rotamer_recovery (RRComparerOP comparer, RRReporterOP reporter, core::pose::Pose const &pose1, core::pose::Pose const &pose2, core::conformation::Residue const &res1, core::conformation::Residue const &res2)

Constructor & Destructor Documentation

protocols::rotamer_recovery::RRProtocolReferenceStructure::RRProtocolReferenceStructure

(

)

protocols::rotamer_recovery::RRProtocolReferenceStructure::RRProtocolReferenceStructure

(

core::pose::PoseCOP

reference_pose

)

protocols::rotamer_recovery::RRProtocolReferenceStructure::~RRProtocolReferenceStructure ( )

overridedefault

protocols::rotamer_recovery::RRProtocolReferenceStructure::RRProtocolReferenceStructure

(

RRProtocolReferenceStructure const &

src

)

Member Function Documentation

void protocols::rotamer_recovery::RRProtocolReferenceStructure::append_attributes ( utility::tag::AttributeList &  attlist )

static

Referenced by protocols::rotamer_recovery::RRProtocolReferenceStructureCreator::append_attributes().

string protocols::rotamer_recovery::RRProtocolReferenceStructure::get_name ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRProtocol.

string protocols::rotamer_recovery::RRProtocolReferenceStructure::get_parameters ( ) const

overridevirtual

Implements protocols::rotamer_recovery::RRProtocol.

void protocols::rotamer_recovery::RRProtocolReferenceStructure::parse_attributes_from_tag ( basic::datacache::DataMap const &  dm, utility::tag::TagCOP  tag  )

overridevirtual

As the RRProtocol is being read in.

Reimplemented from protocols::rotamer_recovery::RRProtocol.

References core::import_pose::pose_from_file(), reference_structure(), and protocols::rotamer_recovery::TR().

void protocols::rotamer_recovery::RRProtocolReferenceStructure::reference_structure

(

core::pose::PoseCOP

reference_pose

)

References reference_pose_.

Referenced by parse_attributes_from_tag(), and run().

void protocols::rotamer_recovery::RRProtocolReferenceStructure::run ( RRComparerOP  comparer, RRReporterOP  reporter, core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  , core::pack::task::PackerTask const &  packer_task  )

overridevirtual

measure rotamer recovery for each residue

Implements protocols::rotamer_recovery::RRProtocol.

References protocols::rotamer_recovery::RRProtocol::measure_rotamer_recovery(), core::pack::task::PackerTask::pack_residue(), core::import_pose::pose_from_file(), reference_pose_, reference_structure(), core::pose::Pose::residue(), core::pose::Pose::size(), and protocols::rotamer_recovery::TR().

Member Data Documentation

core::pose::PoseCOP protocols::rotamer_recovery::RRProtocolReferenceStructure::reference_pose_

private

Referenced by reference_structure(), and run().

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The documentation for this class was generated from the following files:

• src/protocols/rotamer_recovery/RRProtocolReferenceStructure.hh
• src/protocols/rotamer_recovery/RRProtocolReferenceStructure.cc