| add_edge(AssemblyOP const &pre_op_assembly, utility::vector1< AssemblyOP > const &pre_op_assembly_list, AssemblyOP &assembly, utility::vector1< AssemblyOP > &assembly_list) const | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | |
| add_starting_model(AssemblyOP assembly) const override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| append_movie_frame(AssemblyOP assembly, core::Size cycle) const | protocols::legacy_sewing::LegacyAssemblyMover | |
| apply(core::pose::Pose &pose) override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| assembly_scorefxn_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| base_native_bonus_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| boltzman(utility::vector1< AssemblyOP > const &pre_op_assembly_list, utility::vector1< AssemblyOP > &assembly_list, AssemblyOP const &pre_op_assembly, AssemblyOP &working_assembly, core::Size cur_cycle, AssemblyOP &best_complete_assembly, core::Real &best_score) const | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | |
| cen_scorefxn_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| create() | protocols::moves::Mover | virtual |
| define_assembly_mover_ct_gen(utility::tag::XMLSchemaDefinition &xsd) | protocols::legacy_sewing::LegacyAssemblyMover | static |
| define_mc_assembly_mover_ct_gen(utility::tag::XMLSchemaDefinition &xsd) | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | static |
| delete_edge(AssemblyOP &assembly, utility::vector1< AssemblyOP > &assembly_list) const | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | |
| edge_file_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| fa_scorefxn_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| follow_random_edge_from_node(AssemblyOP assembly, ModelNode const *reference_node) const | protocols::legacy_sewing::LegacyAssemblyMover | |
| fresh_instance() const override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| generate_assembly() override | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_centroid_pose(AssemblyOP assembly) const | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_fullatom_pose(AssemblyOP assembly) const | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| graph_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| hash_pdb_model(Model const &pdb_model) | protocols::legacy_sewing::LegacyAppendAssemblyMover | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialized_ | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| legacy_assembly_mover_ct_namer(std::string const &) | protocols::legacy_sewing::LegacyAssemblyMover | static |
| LegacyAppendAssemblyMover() | protocols::legacy_sewing::LegacyAppendAssemblyMover | |
| LegacyAssemblyMover() | protocols::legacy_sewing::LegacyAssemblyMover | |
| LegacyMonteCarloAssemblyMover() | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | |
| match_segments_ | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| models_ | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::legacy_sewing::LegacyAppendAssemblyMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| neighbor_cutoff_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| output_stats(AssemblyOP const &assembly, core::pose::Pose &pose, std::string indicator_whether_from_LegacyMonteCarloAssemblyMover_or_LegacyExhaustiveAssemblyMover) | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| parent typedef | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| parse_global_requirements(TagCOP tag, basic::datacache::DataMap &data) | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| parse_intra_segment_requirements(TagCOP tag, basic::datacache::DataMap &data) | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| parse_requirements(TagCOP tag, basic::datacache::DataMap &data) | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| partner_pose_ | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| Pose typedef | protocols::moves::Mover | |
| pose_segment_ends_ | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| pose_segment_starts_ | protocols::legacy_sewing::LegacyAppendAssemblyMover | private |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::legacy_sewing::LegacyAppendAssemblyMover | static |
| refine_assembly(AssemblyOP &assembly) override | protocols::legacy_sewing::LegacyAppendAssemblyMover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const override | protocols::legacy_sewing::LegacyAssemblyMover | virtual |
| requirement_factory_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| requirement_set_ | protocols::legacy_sewing::LegacyAssemblyMover | protected |
| reset_status() | protocols::moves::Mover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| switch_edge(AssemblyOP const &pre_op_assembly, utility::vector1< AssemblyOP > const &pre_op_assembly_list, AssemblyOP &assembly, utility::vector1< AssemblyOP > &assembly_list) const | protocols::legacy_sewing::LegacyMonteCarloAssemblyMover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
1.8.7