protocols::denovo_design::components::FoldGraph Member List

This is the complete list of members for protocols::denovo_design::components::FoldGraph, including all inherited members.

add_combined_solutions(Solutions &solutions) const	protocols::denovo_design::components::FoldGraph	private
add_edge(std::string const &seg1, std::string const &seg2)	protocols::denovo_design::components::FoldGraph	private
add_non_polymeric_connections(Solutions &solutions) const	protocols::denovo_design::components::FoldGraph	private
add_peptide_edge(std::string const &seg1, std::string const &seg2)	protocols::denovo_design::components::FoldGraph	private
build_node2seg(SegmentToNodeMap const &seg2node)	protocols::denovo_design::components::FoldGraph	private
build_seg2node()	protocols::denovo_design::components::FoldGraph	private
check_solution(Solution const &solution) const	protocols::denovo_design::components::FoldGraph	private
compute_best_solution(SegmentNames const &staple_loops) const	protocols::denovo_design::components::FoldGraph
create_loops(SegmentNames const &staple_loops) const	protocols::denovo_design::components::FoldGraph
create_loops(Solution const &solution) const	protocols::denovo_design::components::FoldGraph
create_loops_dfs(Solution &solutions, NodeSet &visited, core::Size const current_node) const	protocols::denovo_design::components::FoldGraph	private
cutpoints_	protocols::denovo_design::components::FoldGraph	private
find_cutpoint_in_range(int const min_res, int const max_res) const	protocols::denovo_design::components::FoldGraph	private
find_cutpoints()	protocols::denovo_design::components::FoldGraph	private
fold_tree(SegmentNames const &start_segment) const	protocols::denovo_design::components::FoldGraph
fold_tree_rec(core::kinematics::FoldTree &ft, NodeSet &visited, NodeStack &node_stack, std::string const &segment_name, core::Size const parent_resid, int const parent_direction, bool const polymer_only) const	protocols::denovo_design::components::FoldGraph	private
FoldGraph(StructureData const &perm)	protocols::denovo_design::components::FoldGraph
g_	protocols::denovo_design::components::FoldGraph	private
gpeptide_	protocols::denovo_design::components::FoldGraph	private
has_edge(std::string const &seg1, std::string const &seg2) const	protocols::denovo_design::components::FoldGraph	private
has_edge(core::Size const n1, core::Size const n2) const	protocols::denovo_design::components::FoldGraph	private
has_peptide_edge(std::string const &seg1, std::string const &seg2) const	protocols::denovo_design::components::FoldGraph	private
has_peptide_edge(core::Size const n1, core::Size const n2) const	protocols::denovo_design::components::FoldGraph	private
MovableGroupToSegmentNameListMap typedef	protocols::denovo_design::components::FoldGraph
node2seg_	protocols::denovo_design::components::FoldGraph	private
nodeidx(std::string const &segment) const	protocols::denovo_design::components::FoldGraph
NodeSet typedef	protocols::denovo_design::components::FoldGraph
NodeStack typedef	protocols::denovo_design::components::FoldGraph
NodeToSegmentMap typedef	protocols::denovo_design::components::FoldGraph
sd() const	protocols::denovo_design::components::FoldGraph
sd_	protocols::denovo_design::components::FoldGraph	private
seg2node_	protocols::denovo_design::components::FoldGraph	private
segment(core::Size const nodeidx) const	protocols::denovo_design::components::FoldGraph
SegmentToNodeMap typedef	protocols::denovo_design::components::FoldGraph
select_best_solution(Solutions const &solutions) const	protocols::denovo_design::components::FoldGraph	private
Solution typedef	protocols::denovo_design::components::FoldGraph
Solutions typedef	protocols::denovo_design::components::FoldGraph
sort_solutions(Solutions &solutions) const	protocols::denovo_design::components::FoldGraph	private
~FoldGraph() override	protocols::denovo_design::components::FoldGraph