| apply(core::pose::Pose &pose) override | protocols::electron_density::DockIntoDensityMover | virtual |
| apply_multi(utility::vector1< core::pose::PoseOP > &poses) | protocols::electron_density::DockIntoDensityMover | |
| apply_transform(core::pose::Pose &pose, RBfitResult const &transform) | protocols::electron_density::DockIntoDensityMover | |
| B_ | protocols::electron_density::DockIntoDensityMover | private |
| center_on_middle_ca_ | protocols::electron_density::DockIntoDensityMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| cluster_oversample_ | protocols::electron_density::DockIntoDensityMover | private |
| cluster_radius_ | protocols::electron_density::DockIntoDensityMover | private |
| convolute_single_residue_ | protocols::electron_density::DockIntoDensityMover | private |
| create() | protocols::moves::Mover | virtual |
| delR_ | protocols::electron_density::DockIntoDensityMover | private |
| dens_wt_ | protocols::electron_density::DockIntoDensityMover | private |
| density_grid_search(core::Size pose_idx, core::pose::Pose &pose, RBfitResultDB &results) | protocols::electron_density::DockIntoDensityMover | |
| do_filter(utility::vector1< core::pose::PoseOP > const &poses, RBfitResultDB &results_in, bool rescore) | protocols::electron_density::DockIntoDensityMover | |
| do_filter(RBfitResultDB &results_in) | protocols::electron_density::DockIntoDensityMover | |
| do_filter(RefinementResultDB &results_in) | protocols::electron_density::DockIntoDensityMover | |
| do_refine_ | protocols::electron_density::DockIntoDensityMover | private |
| do_refinement(utility::vector1< core::pose::PoseOP > const &poses, RBfitResultDB &results_in, RefinementResultDB &results_out) | protocols::electron_density::DockIntoDensityMover | |
| DockIntoDensityMover() | protocols::electron_density::DockIntoDensityMover | inline |
| fragDens_ | protocols::electron_density::DockIntoDensityMover | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::electron_density::DockIntoDensityMover | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_radius(core::pose::Pose const &pose, numeric::xyzVector< core::Real > &com) | protocols::electron_density::DockIntoDensityMover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_spectrum(core::pose::Pose const &pose, utility::vector1< core::Real > &pose_1dspec) | protocols::electron_density::DockIntoDensityMover | |
| get_type() const | protocols::moves::Mover | inline |
| gridStep_ | protocols::electron_density::DockIntoDensityMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| laplacian_offset_ | protocols::electron_density::DockIntoDensityMover | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| map_from_spectrum(utility::vector1< core::Real > const &pose_1dspec, ObjexxFCL::FArray3D< core::Real > &rot) | protocols::electron_density::DockIntoDensityMover | |
| max_rot_per_trans_ | protocols::electron_density::DockIntoDensityMover | private |
| min_backbone_ | protocols::electron_density::DockIntoDensityMover | private |
| mindist_ | protocols::electron_density::DockIntoDensityMover | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| native_ | protocols::electron_density::DockIntoDensityMover | private |
| native_com_ | protocols::electron_density::DockIntoDensityMover | private |
| ncyc_ | protocols::electron_density::DockIntoDensityMover | private |
| normscores_ | protocols::electron_density::DockIntoDensityMover | private |
| nRsteps_ | protocols::electron_density::DockIntoDensityMover | private |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data) | protocols::moves::Mover | virtual |
| passthrough_ | protocols::electron_density::DockIntoDensityMover | private |
| point_radius_ | protocols::electron_density::DockIntoDensityMover | private |
| points_defined_ | protocols::electron_density::DockIntoDensityMover | private |
| points_to_search_ | protocols::electron_density::DockIntoDensityMover | private |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| poseSphericalSamples(core::pose::Pose const &pose, ObjexxFCL::FArray3D< core::Real > &sigR) | protocols::electron_density::DockIntoDensityMover | |
| predefine_search(utility::vector1< numeric::xyzVector< core::Real > > &pts_in) | protocols::electron_density::DockIntoDensityMover | |
| print_best_rms(core::pose::Pose const &pose, RBfitResultDB const &results) | protocols::electron_density::DockIntoDensityMover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| select_points(core::pose::Pose &pose) | protocols::electron_density::DockIntoDensityMover | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| setB(core::Real B) | protocols::electron_density::DockIntoDensityMover | inline |
| setCenterOnMiddleCA(bool val) | protocols::electron_density::DockIntoDensityMover | inline |
| setClusterOversamp(core::Size cluster_oversample) | protocols::electron_density::DockIntoDensityMover | inline |
| setClusterRadius(core::Real cluster_radius) | protocols::electron_density::DockIntoDensityMover | inline |
| setConvoluteSingleR(bool convolute_single_residue) | protocols::electron_density::DockIntoDensityMover | inline |
| setDelR(core::Real delR) | protocols::electron_density::DockIntoDensityMover | inline |
| setDoRefine(bool do_refine) | protocols::electron_density::DockIntoDensityMover | inline |
| setFragDens(core::Real fragDens) | protocols::electron_density::DockIntoDensityMover | inline |
| setGridStep(core::Size gridStep) | protocols::electron_density::DockIntoDensityMover | inline |
| setLaplacianOffset(core::Real laplacian_offset) | protocols::electron_density::DockIntoDensityMover | inline |
| setMaxRotPerTrans(core::Size max_rot_per_trans) | protocols::electron_density::DockIntoDensityMover | inline |
| setMinBackbone(bool min_backbone) | protocols::electron_density::DockIntoDensityMover | inline |
| setMinDist(core::Real mindist) | protocols::electron_density::DockIntoDensityMover | inline |
| setNative(core::pose::PoseOP native) | protocols::electron_density::DockIntoDensityMover | |
| setNCyc(core::Size ncyc) | protocols::electron_density::DockIntoDensityMover | inline |
| setNormScores(bool normscores) | protocols::electron_density::DockIntoDensityMover | inline |
| setNRsteps(core::Real nRsteps) | protocols::electron_density::DockIntoDensityMover | inline |
| setOutputSilent(std::string silent_out) | protocols::electron_density::DockIntoDensityMover | inline |
| setPassThrough(bool passthrough) | protocols::electron_density::DockIntoDensityMover | inline |
| setPointRadius(core::Real point_radius) | protocols::electron_density::DockIntoDensityMover | inline |
| setSymminfo(DensitySymmInfo const &symminfo) | protocols::electron_density::DockIntoDensityMover | inline |
| setTag(std::string tag) | protocols::electron_density::DockIntoDensityMover | inline |
| setTopN(core::Real topNtrans, core::Real topNfilter, core::Real topNfinal) | protocols::electron_density::DockIntoDensityMover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| silent_ | protocols::electron_density::DockIntoDensityMover | private |
| Strings typedef | protocols::moves::Mover | |
| symminfo_ | protocols::electron_density::DockIntoDensityMover | private |
| tag_ | protocols::electron_density::DockIntoDensityMover | private |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| topNfilter_ | protocols::electron_density::DockIntoDensityMover | private |
| topNfinal_ | protocols::electron_density::DockIntoDensityMover | private |
| topNtrans_ | protocols::electron_density::DockIntoDensityMover | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
1.8.7