util.hh File Reference

utility functions for handling of symmetric conformations More...

#include <core/conformation/symmetry/SymmetricConformation.fwd.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/symmetry/SymmData.fwd.hh>
#include <core/conformation/symmetry/SymmetryInfo.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <core/types.hh>
#include <utility/vector1.fwd.hh>
#include <map>

Namespaces
	core
	A class for reading in the atom type properties.
	core::conformation
	core::conformation::symmetry

Functions
std::string	core::conformation::symmetry::get_chain_id_string ()
bool	core::conformation::symmetry::is_symmetric (conformation::Conformation const &conf)
bool	core::conformation::symmetry::is_mirror_symmetric (conformation::Conformation const &conf)
bool	core::conformation::symmetry::is_symmetric (conformation::symmetry::SymmetryInfo const &symminfo)
conformation::symmetry::SymmetricConformationOP	core::conformation::symmetry::setup_symmetric_conformation (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata, std::map< core::Size, char > src_conf2pdb_chain)
kinematics::FoldTree	core::conformation::symmetry::set_fold_tree_from_symm_data (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata, std::map< core::Size, char > src_conf2pdb_chain)
kinematics::FoldTree	core::conformation::symmetry::replaced_symmetric_foldtree_with_new_monomer (kinematics::FoldTree symm_f, conformation::symmetry::SymmetryInfo symmetry_info, kinematics::FoldTree monomer_f)
void	core::conformation::symmetry::recenter (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata)
void	core::conformation::symmetry::shift_jump_numbers_in_dofs (conformation::Conformation &conformation, Size shift)
kinematics::FoldTree	core::conformation::symmetry::get_asymm_unit_fold_tree (core::conformation::Conformation const &conf)
void	core::conformation::symmetry::symmetrize_fold_tree (core::conformation::Conformation const &conf, kinematics::FoldTree &f)
	Converts an asymmetric foldtree (f) with virtual root into a symmetric foldtree compatible with symmetric conformation (conf) More...
void	core::conformation::symmetry::set_asymm_unit_fold_tree (core::conformation::Conformation &conf, kinematics::FoldTree const &f)
int	core::conformation::symmetry::residue_center_of_mass (conformation::Conformation const &conformation, int const start, int const stop)
int	core::conformation::symmetry::return_nearest_residue (conformation::Conformation const &conformation, int const begin, int const end, Vector center)
std::string	core::conformation::symmetry::show_foldtree (core::conformation::symmetry::SymmetricConformation const &symm_conf, SymmData const &symmdata, std::map< char, std::pair< Size, Size > > const &chain2range)
void	core::conformation::symmetry::calculate_inverting_virtuals (core::kinematics::FoldTree const &ft, Conformation const &conf, SymmetryInfo const &symm_info, utility::vector1< bool > &mirrored_subs, utility::vector1< std::pair< bool, bool > > &mirrored_jumps)
	A very specific helper function that counts the number of mirror ops from root->each subunit More...

Detailed Description

utility functions for handling of symmetric conformations

Author

Ingemar Andre