| add_structure_to_library(core::io::silent::SilentStructOP pss, std::string add_algorithm="") | protocols::mpi_refinement::MPI_Refinement | protectedvirtual |
| add_structure_to_library_add_n_replace(core::io::silent::SilentStruct &pss) | protocols::mpi_refinement::MPI_Refinement | protected |
| add_structure_to_library_direct(core::io::silent::SilentStruct &pss) | protocols::mpi_refinement::MPI_Refinement | protected |
| add_structure_to_library_single_replace(core::io::silent::SilentStruct &pss) | protocols::mpi_refinement::MPI_Refinement | protected |
| add_structures_to_library(protocols::wum::SilentStructStore &new_structs, std::string add_algorithm="") | protocols::mpi_refinement::MPI_Refinement | protectedvirtual |
| const_iterator typedef | protocols::wum::WorkUnitManager | |
| dump_structures(const protocols::wum::SilentStructStore &new_structs, bool score_only=true, std::string const prefix="") const | protocols::mpi_refinement::MPI_Refinement | protected |
| fobj_ | protocols::mpi_refinement::MPI_Refinement | protected |
| format_silent_struct(const core::io::silent::SilentStructOP &ss) const | protocols::mpi_refinement::MPI_Refinement | protected |
| format_silent_struct(const core::io::silent::SilentStruct &ss) const | protocols::mpi_refinement::MPI_Refinement | protected |
| get_machine_letter() | protocols::wum::MPI_WorkUnitManager | protected |
| go() override=0 | protocols::wum::MPI_WorkUnitManager | pure virtual |
| ident_string_ | protocols::mpi_refinement::MPI_Refinement | private |
| inbound() | protocols::wum::WorkUnitManager | inline |
| inbound() const | protocols::wum::WorkUnitManager | inline |
| init()=0 | protocols::wum::MPI_WorkUnitManager | protectedpure virtual |
| iterator typedef | protocols::wum::WorkUnitManager | |
| jobname_ | protocols::mpi_refinement::MPI_Refinement | private |
| last_save_state_ | protocols::mpi_refinement::MPI_Refinement | private |
| library_central() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| library_central_ | protocols::mpi_refinement::MPI_Refinement | private |
| library_ref() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| library_ref_ | protocols::mpi_refinement::MPI_Refinement | private |
| limit_library() | protocols::mpi_refinement::MPI_Refinement | protected |
| load_state(std::string prefix="default") | protocols::mpi_refinement::MPI_Refinement | protected |
| load_structures_from_cmdline_into_library(protocols::wum::SilentStructStore &library) | protocols::mpi_refinement::MPI_Refinement | protected |
| max_lib_size() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| max_lib_size_ | protocols::mpi_refinement::MPI_Refinement | private |
| max_ref_lib_size() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| max_ref_lib_size_ | protocols::mpi_refinement::MPI_Refinement | private |
| mem_foot_print() const | protocols::wum::WorkUnitManager | inlineprotected |
| mpi_feedback() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| mpi_feedback_ | protocols::mpi_refinement::MPI_Refinement | private |
| mpi_metropolis_temp_ | protocols::mpi_refinement::MPI_Refinement | private |
| MPI_Refinement(char machine_letter) | protocols::mpi_refinement::MPI_Refinement | |
| mpi_resume() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| mpi_resume_ | protocols::mpi_refinement::MPI_Refinement | private |
| MPI_TIMING enum name | protocols::wum::MPI_WorkUnitManager | protected |
| MPI_WorkUnitManager(char machine_letter) | protocols::wum::MPI_WorkUnitManager | |
| n_batchrelax_ | protocols::mpi_refinement::MPI_Refinement | protected |
| n_loophash_ | protocols::mpi_refinement::MPI_Refinement | protected |
| native_given_ | protocols::mpi_refinement::MPI_Refinement | protected |
| native_pose_ | protocols::mpi_refinement::MPI_Refinement | protected |
| objective_function_ | protocols::mpi_refinement::MPI_Refinement | private |
| outbound() | protocols::wum::WorkUnitManager | inline |
| outbound() const | protocols::wum::WorkUnitManager | inline |
| pose0_ | protocols::mpi_refinement::MPI_Refinement | protected |
| print_library(protocols::wum::SilentStructStore &library, std::string const prefix="LIB ") | protocols::mpi_refinement::MPI_Refinement | protected |
| print_stats() override | protocols::mpi_refinement::MPI_Refinement | protectedvirtual |
| print_stats_auto() | protocols::wum::MPI_WorkUnitManager | protectedvirtual |
| print_summary(std::string const prefix="SUMM ") | protocols::mpi_refinement::MPI_Refinement | protected |
| print_timing_stats() | protocols::wum::MPI_WorkUnitManager | protected |
| process_inbound_wus()=0 | protocols::wum::MPI_WorkUnitManager | protectedpure virtual |
| process_incoming_msgs(bool wait_until_message=false) | protocols::wum::MPI_WorkUnitManager | protected |
| process_outbound_wus()=0 | protocols::wum::MPI_WorkUnitManager | protectedpure virtual |
| read_queue(WorkUnitQueue &the_queue, std::istream &in) | protocols::wum::WorkUnitManager | protected |
| read_queues_from_file(const std::string &prefix="default") | protocols::wum::WorkUnitManager | protected |
| read_work_unit(WorkUnitBaseOP &qualified_wu, std::istream &in) | protocols::wum::WorkUnitManager | protected |
| receive_MPI_workunit(core::Size node_rank=MPI_ANY_SOURCE) | protocols::wum::MPI_WorkUnitManager | protected |
| register_work_units(const protocols::wum::WorkUnitList &work_unit_list) | protocols::wum::WorkUnitManager | |
| report_time() const | protocols::mpi_refinement::MPI_Refinement | protected |
| reset_timing_stats() | protocols::wum::MPI_WorkUnitManager | protected |
| retag_library(protocols::wum::SilentStructStore &store, std::string const prefix) const | protocols::mpi_refinement::MPI_Refinement | protected |
| rms_limit_ | protocols::mpi_refinement::MPI_Refinement | private |
| save_state(std::string prefix="default") | protocols::mpi_refinement::MPI_Refinement | protected |
| save_state_auto() | protocols::mpi_refinement::MPI_Refinement | protected |
| save_state_interval_ | protocols::mpi_refinement::MPI_Refinement | private |
| score(const core::io::silent::SilentStructOP &ss) const | protocols::mpi_refinement::MPI_Refinement | protected |
| score(const core::io::silent::SilentStruct &ss) const | protocols::mpi_refinement::MPI_Refinement | protected |
| send_MPI_workunit(const WorkUnitBaseOP &wu, int dest_rank) const | protocols::wum::MPI_WorkUnitManager | protected |
| send_next_WU_on_request() | protocols::wum::MPI_WorkUnitManager | protected |
| send_random_library_struct(core::Size dest_rank, core::Size ssid) const | protocols::mpi_refinement::MPI_Refinement | protected |
| send_random_library_structs(core::Size dest_rank, core::Size nsend) | protocols::mpi_refinement::MPI_Refinement | protected |
| send_sortedpick_library_structs(core::Size dest_rank, core::Size nsend, std::string const scorename, bool const weighted, bool const inverse=false, core::Real const kT=0.2) | protocols::mpi_refinement::MPI_Refinement | protected |
| set_defaults() | protocols::mpi_refinement::MPI_Refinement | |
| set_ident_string(std::string new_ident) | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| set_max_lib_size(core::Size max_lib_size) | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| set_max_ref_lib_size(core::Size max_ref_lib_size) | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| set_mpi_feedback(const std::string &mpi_feedback) | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| setup_multi_objective() | protocols::mpi_refinement::MPI_Refinement | protected |
| shave_library(protocols::wum::SilentStructStore &new_structs, std::string const scorename, core::Real const frac) const | protocols::mpi_refinement::MPI_Refinement | protected |
| sim_replace_obj_ | protocols::mpi_refinement::MPI_Refinement | private |
| start_timer(MPI_TIMING timing_mode) const | protocols::wum::MPI_WorkUnitManager | protected |
| starttime_ | protocols::mpi_refinement::MPI_Refinement | protected |
| TIMING_CPU enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_end enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_IDLE enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_IO_READ enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_IO_WRITE enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_TRANSFER_RECV enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_TRANSFER_SEND enum value | protocols::wum::MPI_WorkUnitManager | protected |
| TIMING_WAIT enum value | protocols::wum::MPI_WorkUnitManager | protected |
| total_metropolis_ | protocols::mpi_refinement::MPI_Refinement | protected |
| total_metropolis_accepts_ | protocols::mpi_refinement::MPI_Refinement | protected |
| total_structures_ | protocols::mpi_refinement::MPI_Refinement | protected |
| total_structures_relax_ | protocols::mpi_refinement::MPI_Refinement | protected |
| totaltime_batchrelax_ | protocols::mpi_refinement::MPI_Refinement | protected |
| totaltime_loophash() | protocols::mpi_refinement::MPI_Refinement | inlineprotected |
| totaltime_loophash_ | protocols::mpi_refinement::MPI_Refinement | protected |
| update_library_NSGAII(protocols::wum::SilentStructStore &new_structs) | protocols::mpi_refinement::MPI_Refinement | protected |
| wall_time() const | protocols::wum::MPI_WorkUnitManager | protected |
| work_unit_list() const | protocols::wum::WorkUnitManager | inlineprotected |
| work_unit_list() | protocols::wum::WorkUnitManager | inlineprotected |
| WorkUnitManager() | protocols::wum::WorkUnitManager | inline |
| write_queue(const WorkUnitQueue &the_queue, std::ostream &out) const | protocols::wum::WorkUnitManager | protected |
| write_queues_to_file(const std::string &prefix="default") const | protocols::wum::WorkUnitManager | protected |
| write_work_unit(const WorkUnitBaseOP &wu, std::ostream &out) const | protocols::wum::WorkUnitManager | protected |
| ~MPI_Refinement() override=default | protocols::mpi_refinement::MPI_Refinement | |
| ~MPI_WorkUnitManager() override=default | protocols::wum::MPI_WorkUnitManager | |
| ~WorkUnitManager() override=default | protocols::wum::WorkUnitManager | |
1.8.7