#include <PairingLibrary.hh>

Inheritance diagram for protocols::jumping::SpecificGeometryLibrary:

Additional Inherited Members
Public Types inherited from protocols::jumping::PairingLibrary
typedef std::vector < PairingTemplate >	PairingTemplateList

typedef std::map< std::pair < int, int > , PairingTemplateList >	PairingTemplateMap

Public Member Functions inherited from protocols::jumping::PairingLibrary
	PairingLibrary ()

void	read_from_file (std::string const &fn)

void	read_from_file_no_filters (std::string const &fn)

core::kinematics::RT	get_random_beta_sheet_jump (int const orientation, int const pleating) const
	classic rosetta++ accessor More...

core::kinematics::RT	get_random_tmh_jump (int const orientation, int const pos1, int const pos2) const
	classic rosetta++ accessor More...

void	set_tmh_jump (core::pose::Pose pose, int const jump_number, int const orientation, int const pos1, int const pos2) const

void	create_jump_fragments (int const orientation, int const pleating, bool bWithTorsion, core::fragment::FragDataOPs &) const override
	puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating This creates Fragments with single JumpSRFD — PairingLibrary also stores phi/psi/omega of start and end residue use bWithTorsion = true to get FragData with BBTorsionSRFD and JumpSRFD length of single FragData is noTorsion 1 withTorsion 3 bWithTorsion = true length of single FragData is 3 start jump end More...

core::Size	size () const

void	generate_jump_frags (core::scoring::dssp::PairingsList const &pairings, core::kinematics::MoveMap const &mm, bool bWithTorsion, core::fragment::FragSet &frags_accumulator) override

Public Member Functions inherited from protocols::jumping::BasePairingLibrary
	~BasePairingLibrary () override

The documentation for this class was generated from the following file:

src/protocols/jumping/PairingLibrary.hh

Additional Inherited Members