protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer Member List

This is the complete list of members for protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer, including all inherited members.

align_all_pose(utility::vector1< core::pose::PoseOP > const &side_ONE_pose_data_list, utility::vector1< core::pose::PoseOP > const &side_TWO_pose_data_list)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
best_combine_score_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
clash_dist_cutoff_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
combine_helical_silent_file_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
contact_dist_cutoff_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
convert_silent_file_to_pose_data_list(core::import_pose::pose_stream::SilentFilePoseInputStreamOP &silent_file_stream, core::Size const pose_list_id)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
do_some_filtering()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
figure_out_appended_and_prepended_res_list()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
figure_out_last_appended_and_last_prepended_res()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
figure_out_NUM_pose_list()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
filter()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
filter_for_chain_closable_geometry_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
filter_for_moving_res_contact_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
filter_for_previous_clash_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
filter_for_previous_contact_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
filterer_count_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
filterered_combine_tag_info_list_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
full_to_input_res_map_ONE_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
full_to_input_res_map_TWO_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
get_parent_tag(utility::vector1< std::string > const &tag_token) const	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
input_pose_ONE_appended_res_list_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
input_pose_ONE_last_appended_res_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
input_pose_TWO_last_prepended_res_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
input_pose_TWO_prepended_res_list_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
is_sibling_sugar_rotamer_pose(std::string const &curr_tag, std::string const &prev_tag, std::map< std::string, std::string > const &tag_to_source_map) const	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
is_virt_sample_sugar_tag(std::string const &tag, utility::vector1< std::string > const &tag_token) const	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
max_decoys_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
max_pose_data_list_size_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
moving_res_contact_dist_cutoff_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
moving_res_contact_filter(core::pose::PoseOP const &side_ONE_pose_data, core::pose::PoseOP const &side_TWO_pose_data)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
moving_res_to_base_contact_only_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
num_clash_cutoff_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
num_contact_cutoff_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
output_filename_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
parin_favorite_output_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
pass_all_filters(core::pose::PoseOP const &side_ONE_pose_data, core::pose::PoseOP const &side_TWO_pose_data)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
pass_screen_struct_pair_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
previously_builded_res_clash_filter(core::pose::PoseOP const &side_ONE_pose_data, core::pose::PoseOP const &side_TWO_pose_data)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
previously_builded_res_contact_filter(core::pose::PoseOP const &side_ONE_pose_data, core::pose::PoseOP const &side_TWO_pose_data)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
previously_builded_res_VDW_filter(core::pose::PoseOP const &side_ONE_pose_data, core::pose::PoseOP const &side_TWO_pose_data, core::Real const overlap_dist_cutoff, core::Size const num_atom_contacts_cutoff)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
rsd_set_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
set_filter_for_previous_clash(core::Real const setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
set_filter_for_previous_contact(core::Real const setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
set_max_decoys(core::Size const &setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
set_output_filename(std::string const &setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
set_parin_favorite_output(bool const setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
set_silent_files_in(utility::vector1< std::string > const &setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
set_undercount_sugar_rotamers(bool const setting)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	inline
setup_silent_file_stream()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
setup_tag_to_source_map()	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
side_ONE_NUM_pose_list_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
side_ONE_pose_list_id_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
side_TWO_NUM_pose_list_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
side_TWO_pose_list_id_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
silent_file_stream_ONE_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
silent_file_stream_TWO_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
silent_files_in_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
sort_Combine_Tags_Info(utility::vector1< Combine_Tags_Info > &combine_tags_info_list)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
StepWiseRNA_CombineLongLoopFilterer(working_parameters::StepWiseWorkingParametersCOP working_parameters, bool const combine_helical_silent_file)	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer
tag_to_source_map_ONE_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
tag_to_source_map_TWO_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
total_input_struct_pair_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
undercount_sugar_rotamers_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
working_parameters_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
worst_combine_score_	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer	private
~StepWiseRNA_CombineLongLoopFilterer() override	protocols::stepwise::modeler::rna::StepWiseRNA_CombineLongLoopFilterer