util.hh File Reference

#include <core/scoring/motif/motif_hash_stuff.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/util.hh>
#include <core/pose/xyzStripeHashPose.fwd.hh>
#include <numeric/xyzVector.hh>
#include <utility/fixedsizearray1.hh>
#include <numeric/geometry/hashing/SixDHasher.hh>
#include <numeric/xyzTransform.hh>
#include <numeric/HomogeneousTransform.hh>
#include <boost/unordered_map.hpp>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::motif

Functions
ostream &	core::scoring::motif::operator<< (ostream &out, Real6 const &r6)
RM_Type	core::scoring::motif::rpm_type1 (RPM_Type const &type)
RM_Type	core::scoring::motif::rpm_type2 (RPM_Type const &type)
Reals	core::scoring::motif::get_sasa (Pose const &pose, Real const &probesize)
Reals	core::scoring::motif::get_nbrs (Pose const &pose)
void	core::scoring::motif::xform_pose (core::pose::Pose &pose, Xform const &s, Size sres=1, Size eres=0)
Mat	core::scoring::motif::random_rotation ()
std::string	core::scoring::motif::tag_from_pdb_fname (string const &fname0)
Real6	core::scoring::motif::inverse_rt6 (Real6 const &rt)
Xform	core::scoring::motif::get_residue_pair_xform (Pose const &pose1, Size ir, Pose const &pose2, Size jr, RPM_Type const &type)
Real6	core::scoring::motif::get_residue_pair_rt6 (Pose const &pose1, Size ir, Pose const &pose2, Size jr, RPM_Type const &type)
Xform	core::scoring::motif::get_residue_pair_xform (Pose const &pose, Size ir, Size jr, RPM_Type const &type)
Real6	core::scoring::motif::get_residue_pair_rt6 (Pose const &pose, Size ir, Size jr, RPM_Type const &type)
void	core::scoring::motif::set_residue_pair_xform (Xform const &x, Pose &pose, Size ir, Size jr, RPM_Type const &type)
Real	core::scoring::motif::align_motif_pose (Pose &motif_pose, Pose const &paln1, Size const &ir, Pose const &paln2, Size const &jr, RPM_Type const &type)
Real	core::scoring::motif::align_motif_pose_break (Pose &, Pose const &, Size const &, Pose const &, Size const &, RPM_Type const &)
Real	core::scoring::motif::align_motif_pose_by_one_frame (Pose &, Pose const &, Size const &, Pose const &, Size const &, RPM_Type const &)
Real	core::scoring::motif::align_motif_pose_super (Pose &motif_pose, Pose const &paln1, Size const &ir, Pose const &paln2, Size const &jr, RPM_Type const &type)
Real6	core::scoring::motif::get_bins (Real c, Real a)
core::id::AtomID_Mask	core::scoring::motif::get_motif_atom_mask (Pose const &motif_pose, RPM_Type const &type, bool with_Hpol)
void	core::scoring::motif::HACK_dump_helix (Pose const &pose, string fname, int beg, int end)
int	core::scoring::motif::HACK_dump_helices (Pose const &pose, string tag, int nres, int minlen=10)
Real	core::scoring::motif::angle_distance (Real const &a, Real const &b)
core::Real	core::scoring::motif::aa_trustworthiness (char aa)