StemFinderFilter.cc File Reference

#include <protocols/simple_filters/StemFinderFilter.hh>
#include <protocols/simple_filters/StemFinderFilterCreator.hh>
#include <utility/tag/Tag.hh>
#include <basic/Tracer.hh>
#include <core/pose/Pose.hh>
#include <core/pose/ResidueIndexDescription.hh>
#include <core/pose/selection.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <utility/vector1.hh>
#include <string>
#include <utility/string_util.hh>
#include <utility/pointer/memory.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/filters/filter_schemas.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::simple_filters

Functions
static basic::Tracer	protocols::simple_filters::TR ("protocols.simple_filters.StemFinder")
std::string	protocols::simple_filters::dssp (core::pose::Pose const &pose)
	potentially useful utility functions More...
utility::vector1< core::Size >	protocols::simple_filters::positions_in_secstruct (core::pose::Pose const &pose)
	find helix, sheet positions in dssp More...
utility::vector1 < core::pose::PoseOP >	protocols::simple_filters::load_poses (utility::vector1< std::string > const &filenames)
	load PDBs into a vector More...
core::Real	protocols::simple_filters::atom_distance (core::pose::Pose const &p1, core::Size const r1, std::string const &a1, core::pose::Pose const &p2, core::Size const r2, std::string const &a2)
core::Real	protocols::simple_filters::res_res_min_distance (core::pose::Pose const &p1, core::Size const r1, core::pose::Pose const &p2, core::Size const r2)
	find the minimal atom-atom distance between two residues More...

Detailed Description

Author

Ravit Netzer & Sarel Fleishman