Derived class of class Func representing a Soeding distribution with a user-specified mean and standard deviation. More...

#include <SoedingFunc.hh>

Inheritance diagram for core::scoring::func::SoedingFunc:

[legend]

Public Member Functions
	SoedingFunc ()

FuncOP	clone () const override
	returns a clone of this SoedingFunc More...

bool	operator== (Func const &other) const override
	Equality operator. Looks for strict equality. Floating-point comparison is the rule rather than the exception. More...

bool	same_type_as_me (Func const &other) const override
	Does the input Func, "other", have the same type as me? Necessary for the equality operator to function correctly. All derived Func classes must implement this function. More...

Real	compute_func (Real const x) const

Real	func (Real const x) const override
	Returns the value of this SoedingFunc evaluated at distance x. More...

Real	dfunc (Real const x) const override
	Returns the value of the first derivative of this SoedingFunc at distance x. More...

void	show_definition (std::ostream &out) const override
	show the definition of this SoedingFunc to the specified output stream. More...

void	read_data (std::istream &in) override
	Initializes this SoedingFunc from the given istream. More...

Public Member Functions inherited from core::scoring::func::Func
	~Func () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

bool	operator!= (Func const &other) const
	inequality operator – simply the negation of the (virtual) equality operator More...

virtual Real	estimate_dfunc (Real const r) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+1e-05). More...

virtual Real	estimate_dfunc (Real const r, Real const h) const
	Estimates the derivative of this function at a given radius by calculating the slope of the secant line from func(r) and func(r+h). More...

virtual void	show (std::ostream &out) const
	Prints out space-delimited columns for r, func, dfunc and dfunc_est. The values for func, dfunc and dfunc_est are plotted as a function of r, which is varied from 2-20 in steps of 0.5. The value for dfunc_est is the estimated by the method estimate_dfunc( r ). More...

virtual Size	show_violations (std::ostream &out, Real r, Size verbose_level, Real threshold=1) const
	show some sort of stringified representation of the violations for this constraint. More...

Private Attributes
Real	w1_

Real	mean1_

Real	sdev1_

Real	w2_

Real	mean2_

Real	sdev2_

Friends
std::ostream &	operator<< (std::ostream &out, const SoedingFunc &f)
	Calls show( out ) on this SoedingFunc. More...

Detailed Description

Derived class of class Func representing a Soeding distribution with a user-specified mean and standard deviation.

Constructor & Destructor Documentation

core::scoring::func::SoedingFunc::SoedingFunc ( )

inline

Member Function Documentation

FuncOP core::scoring::func::SoedingFunc::clone ( ) const

inlineoverridevirtual

returns a clone of this SoedingFunc

Implements core::scoring::func::Func.

Real core::scoring::func::SoedingFunc::compute_func ( Real const x ) const

References core::scoring::constraints::dgaussian(), and protocols::hybridization::score.

Real core::scoring::func::SoedingFunc::dfunc ( Real const x ) const

overridevirtual

Returns the value of the first derivative of this SoedingFunc at distance x.

Implements core::scoring::func::Func.

Real core::scoring::func::SoedingFunc::func ( Real const x ) const

overridevirtual

Returns the value of this SoedingFunc evaluated at distance x.

Implements core::scoring::func::Func.

References core::pack::interaction_graph::debug, protocols::mean_field::min(), and protocols::hybridization::score.

bool core::scoring::func::SoedingFunc::operator== ( Func const & other ) const

overridevirtual

Equality operator. Looks for strict equality. Floating-point comparison is the rule rather than the exception.

Implements core::scoring::func::Func.

References core::scoring::func::Func::same_type_as_me().

void core::scoring::func::SoedingFunc::read_data ( std::istream & in )

overridevirtual

Initializes this SoedingFunc from the given istream.

Reimplemented from core::scoring::func::Func.

bool core::scoring::func::SoedingFunc::same_type_as_me ( Func const & other ) const

overridevirtual

Does the input Func, "other", have the same type as me? Necessary for the equality operator to function correctly. All derived Func classes must implement this function.

Implements core::scoring::func::Func.

void core::scoring::func::SoedingFunc::show_definition ( std::ostream & out ) const

overridevirtual

show the definition of this SoedingFunc to the specified output stream.

Reimplemented from core::scoring::func::Func.

Friends And Related Function Documentation

std::ostream& operator<<	(	std::ostream &	out,
		const SoedingFunc &	f
	)

friend

Calls show( out ) on this SoedingFunc.

Member Data Documentation

Real core::scoring::func::SoedingFunc::mean1_

private

Real core::scoring::func::SoedingFunc::mean2_

private

Real core::scoring::func::SoedingFunc::sdev1_

private

Real core::scoring::func::SoedingFunc::sdev2_

private

Real core::scoring::func::SoedingFunc::w1_

private

Real core::scoring::func::SoedingFunc::w2_

private

The documentation for this class was generated from the following files:

src/core/scoring/func/SoedingFunc.hh
src/core/scoring/func/SoedingFunc.cc

Public Member Functions

Private Attributes

Friends

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation