MPSpanInsertionEnergy.cc File Reference

penalize spans with unnatural dG of insertion More...

#include <core/energy_methods/MPSpanInsertionEnergy.hh>
#include <core/energy_methods/MPSpanInsertionEnergyCreator.hh>
#include <core/pose/Pose.hh>
#include <numeric/numeric.functions.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyzVector.hh>
#include <numeric/interpolation/spline/CubicSpline.hh>
#include <boost/lexical_cast.hpp>
#include <map>
#include <utility/exit.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <core/conformation/membrane/SpanningTopology.hh>
#include <core/conformation/membrane/Span.hh>
#include <core/conformation/membrane/Exceptions.hh>
#include <basic/Tracer.hh>
#include <iostream>
#include <utility/io/izstream.hh>
#include <core/scoring/EnergyMap.hh>
#include <utility/vector1.hh>
#include <basic/database/open.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pose/util.tmpl.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::energy_methods

Functions
static basic::Tracer	TR ("core.energy_methods.MPSpanInsertionEnergy")

Detailed Description

penalize spans with unnatural dG of insertion

the distribution of dG of insertion to the membrane is quite narrow. rosetta will easily design TMs with much more more negative dG of insertion. this energy term penalizes the pose for TMs with a dG of insertion very differnet than the natural distribution. as calculated by the dsTbL hydrophobicity scale

Author

Jonathan Weinstein

Function Documentation

static basic::Tracer TR ( "core.energy_methods.MPSpanInsertionEnergy"  )

static