protocols::backbone_moves::local_backbone_mover Namespace Reference

Namespaces
	free_peptide_movers
	gap_solution_pickers

Classes
class	FreePeptide
	FreePeptide represents a free peptide. More...
class	GapCloser
	GapCloser closes the gaps after moving the free peptide. More...
class	LocalBackboneMover
	LocalBackboneMover moves a stretch of backbone locally. More...
class	LocalBackboneMoverCreator
class	Residue
	Residue is a helper class for FreePeptide. More...

Typedefs
typedef utility::pointer::shared_ptr < FreePeptide >	FreePeptideOP
typedef utility::pointer::shared_ptr < FreePeptide const >	FreePeptideCOP
typedef utility::pointer::shared_ptr < GapCloser >	GapCloserOP
typedef utility::pointer::shared_ptr < GapCloser const >	GapCloserCOP
typedef utility::pointer::shared_ptr < LocalBackboneMover >	LocalBackboneMoverOP
typedef utility::pointer::shared_ptr < LocalBackboneMover const >	LocalBackboneMoverCOP

Functions
std::ostream &	operator<< (std::ostream &os, LocalBackboneMover const &mover)
	private methods /// More...
numeric::xyzVector< Real >	xyz_from_internal_coords (numeric::xyzVector< Real > atom1_xyz, numeric::xyzVector< Real > atom2_xyz, numeric::xyzVector< Real > atom3_xyz, Real phi, Real theta, Real d)
	Get the coordinate of an atom given three preceeding atoms and the torsion phi, angle theta and distance d. Note that phi and theta should be in radians. More...
void	xyz_to_vec1 (numeric::xyzVector< Real > const &vec_xyz, fixedsizearray1< Real, 3 > &vec1)
	covert an xyzVector to a vector of 3 real numbers More...

Typedef Documentation

typedef utility::pointer::shared_ptr< FreePeptide const > protocols::backbone_moves::local_backbone_mover::FreePeptideCOP

typedef utility::pointer::shared_ptr< FreePeptide > protocols::backbone_moves::local_backbone_mover::FreePeptideOP

typedef utility::pointer::shared_ptr< GapCloser const > protocols::backbone_moves::local_backbone_mover::GapCloserCOP

typedef utility::pointer::shared_ptr< GapCloser > protocols::backbone_moves::local_backbone_mover::GapCloserOP

typedef utility::pointer::shared_ptr< LocalBackboneMover const > protocols::backbone_moves::local_backbone_mover::LocalBackboneMoverCOP

typedef utility::pointer::shared_ptr< LocalBackboneMover > protocols::backbone_moves::local_backbone_mover::LocalBackboneMoverOP

Function Documentation

std::ostream & protocols::backbone_moves::local_backbone_mover::operator<<	(	std::ostream &	os,
		LocalBackboneMover const &	mover
	)

private methods ///

References protocols::backbone_moves::local_backbone_mover::LocalBackboneMover::show().

numeric::xyzVector< Real > protocols::backbone_moves::local_backbone_mover::xyz_from_internal_coords	(	numeric::xyzVector< Real >	atom1_xyz,
		numeric::xyzVector< Real >	atom2_xyz,
		numeric::xyzVector< Real >	atom3_xyz,
		Real	phi,
		Real	theta,
		Real	d
	)

Get the coordinate of an atom given three preceeding atoms and the torsion phi, angle theta and distance d. Note that phi and theta should be in radians.

References core::kinematics::Stub::M, and core::kinematics::Stub::v.

Referenced by protocols::backbone_moves::local_backbone_mover::FreePeptide::update_xyz_coords().

void protocols::backbone_moves::local_backbone_mover::xyz_to_vec1	(	numeric::xyzVector< Real > const &	vec_xyz,
		fixedsizearray1< Real, 3 > &	vec1
	)

covert an xyzVector to a vector of 3 real numbers

Referenced by protocols::backbone_moves::local_backbone_mover::GapCloser::solve_a_gap().