protocols::antibody::Ab_TemplateInfo Class Reference

Specifically for AntibodyModeling protocol templates. Not for general use. More...

#include <Ab_TemplateInfo.hh>

Inheritance diagram for protocols::antibody::Ab_TemplateInfo:

Public Types
typedef std::map< std::string, core::pose::Pose >	TemplatePoseMap

Public Member Functions
	Ab_TemplateInfo ()
	constructors More...
	Ab_TemplateInfo (bool load_L1, bool load_L2, bool load_L3, bool load_H1, bool load_H2, bool load_H3)
	constructor with arguments 1 More...
	Ab_TemplateInfo (bool load_L1, bool load_L2, bool load_L3, bool load_H1, bool load_H2, bool load_H3, bool camelid)
	constructor with arguments 1 More...
void	load_templates_from_pdbs (bool load_L1, bool load_L2, bool load_L3, bool load_H1, bool load_H2, bool load_H3, bool camelid)
core::pose::Pose	get_one_template_pose (std::string cdr_name)
bool	is_camelid ()
void	show (std::ostream &out=std::cout)

Private Member Functions
void	set_default (bool camelid)
void	obtain_templates_names ()

Private Attributes
bool	load_L1_
bool	load_L2_
bool	load_L3_
bool	load_H1_
bool	load_H2_
bool	load_H3_
TemplatePoseMap	templates_poses_
core::pose::Pose	L1_t_pose_
core::pose::Pose	L2_t_pose_
core::pose::Pose	L3_t_pose_
core::pose::Pose	H1_t_pose_
core::pose::Pose	H2_t_pose_
core::pose::Pose	H3_t_pose_
std::string	LightHeavy_t_name_
std::string	Lfr_t_name_
std::string	Hfr_t_name_
std::string	L1_t_name_
std::string	L2_t_name_
std::string	L3_t_name_
std::string	H1_t_name_
std::string	H2_t_name_
std::string	H3_t_name_
bool	camelid_

Friends
std::ostream &	operator<< (std::ostream &out, const Ab_TemplateInfo &ab_t_info)

Detailed Description

Specifically for AntibodyModeling protocol templates. Not for general use.

Member Typedef Documentation

typedef std::map<std::string, core::pose::Pose> protocols::antibody::Ab_TemplateInfo::TemplatePoseMap

Constructor & Destructor Documentation

protocols::antibody::Ab_TemplateInfo::Ab_TemplateInfo

(

)

constructors

default constructor

protocols::antibody::Ab_TemplateInfo::Ab_TemplateInfo	(	bool	load_L1,
		bool	load_L2,
		bool	load_L3,
		bool	load_H1,
		bool	load_H2,
		bool	load_H3
	)

constructor with arguments 1

protocols::antibody::Ab_TemplateInfo::Ab_TemplateInfo	(	bool	load_L1,
		bool	load_L2,
		bool	load_L3,
		bool	load_H1,
		bool	load_H2,
		bool	load_H3,
		bool	camelid
	)

constructor with arguments 1

Member Function Documentation

pose::Pose protocols::antibody::Ab_TemplateInfo::get_one_template_pose

(

std::string

cdr_name

)

bool protocols::antibody::Ab_TemplateInfo::is_camelid ( )

inline

References camelid_.

void protocols::antibody::Ab_TemplateInfo::load_templates_from_pdbs	(	bool	load_L1,
		bool	load_L2,
		bool	load_L3,
		bool	load_H1,
		bool	load_H2,
		bool	load_H3,
		bool	camelid
	)

References core::import_pose::PDB_file, and core::import_pose::pose_from_file().

void protocols::antibody::Ab_TemplateInfo::obtain_templates_names ( )

private

void protocols::antibody::Ab_TemplateInfo::set_default ( bool  camelid )

private

void protocols::antibody::Ab_TemplateInfo::show

(

std::ostream &

out = std::cout

)

Show the complete setup of the Ab_TemplateInfo

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  out, const Ab_TemplateInfo &  ab_t_info  )

friend

Member Data Documentation

bool protocols::antibody::Ab_TemplateInfo::camelid_

private

Referenced by is_camelid().

std::string protocols::antibody::Ab_TemplateInfo::H1_t_name_

private

Referenced by protocols::antibody::operator<<().

core::pose::Pose protocols::antibody::Ab_TemplateInfo::H1_t_pose_

private

Referenced by protocols::antibody::operator<<().

std::string protocols::antibody::Ab_TemplateInfo::H2_t_name_

private

Referenced by protocols::antibody::operator<<().

core::pose::Pose protocols::antibody::Ab_TemplateInfo::H2_t_pose_

private

Referenced by protocols::antibody::operator<<().

std::string protocols::antibody::Ab_TemplateInfo::H3_t_name_

private

Referenced by protocols::antibody::operator<<().

core::pose::Pose protocols::antibody::Ab_TemplateInfo::H3_t_pose_

private

Referenced by protocols::antibody::operator<<().

std::string protocols::antibody::Ab_TemplateInfo::Hfr_t_name_

private

std::string protocols::antibody::Ab_TemplateInfo::L1_t_name_

private

Referenced by protocols::antibody::operator<<().

core::pose::Pose protocols::antibody::Ab_TemplateInfo::L1_t_pose_

private

Referenced by protocols::antibody::operator<<().

std::string protocols::antibody::Ab_TemplateInfo::L2_t_name_

private

Referenced by protocols::antibody::operator<<().

core::pose::Pose protocols::antibody::Ab_TemplateInfo::L2_t_pose_

private

Referenced by protocols::antibody::operator<<().

std::string protocols::antibody::Ab_TemplateInfo::L3_t_name_

private

Referenced by protocols::antibody::operator<<().

core::pose::Pose protocols::antibody::Ab_TemplateInfo::L3_t_pose_

private

Referenced by protocols::antibody::operator<<().

std::string protocols::antibody::Ab_TemplateInfo::Lfr_t_name_

private

std::string protocols::antibody::Ab_TemplateInfo::LightHeavy_t_name_

private

bool protocols::antibody::Ab_TemplateInfo::load_H1_

private

Referenced by protocols::antibody::operator<<().

bool protocols::antibody::Ab_TemplateInfo::load_H2_

private

Referenced by protocols::antibody::operator<<().

bool protocols::antibody::Ab_TemplateInfo::load_H3_

private

Referenced by protocols::antibody::operator<<().

bool protocols::antibody::Ab_TemplateInfo::load_L1_

private

Referenced by protocols::antibody::operator<<().

bool protocols::antibody::Ab_TemplateInfo::load_L2_

private

Referenced by protocols::antibody::operator<<().

bool protocols::antibody::Ab_TemplateInfo::load_L3_

private

Referenced by protocols::antibody::operator<<().

TemplatePoseMap protocols::antibody::Ab_TemplateInfo::templates_poses_

private

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The documentation for this class was generated from the following files:

• src/protocols/antibody/Ab_TemplateInfo.hh
• src/protocols/antibody/Ab_TemplateInfo.cc