protocols::genetic_algorithm::GeneticAlgorithm Member List

This is the complete list of members for protocols::genetic_algorithm::GeneticAlgorithm, including all inherited members.

add_entity(EntityElements const &traits)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
add_entity(EntityOP entity)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
add_parent_entity(EntityElements const &traits)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
add_parent_entity(EntityOP entity)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
add_parents_from_current_generation()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
best_entities(core::Size num)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
best_fitness_from_current_generation() const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
checkpoint_write_interval() const	protocols::genetic_algorithm::GeneticAlgorithmBase	protected
clear_parents()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
complete()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
curr_gen_entity(core::Size index)	protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation() const	protocols::genetic_algorithm::GeneticAlgorithmBase	inline
current_generation_begin()	protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation_begin() const	protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation_complete()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
current_generation_end()	protocols::genetic_algorithm::GeneticAlgorithmBase
current_generation_end() const	protocols::genetic_algorithm::GeneticAlgorithmBase
entities_checkpoint_filename(std::string suffix="") const	protocols::genetic_algorithm::GeneticAlgorithmBase
entity_cache()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
entity_cache() const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
entity_template() const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
EntityCAP typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
EntityCAPs typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
EntityCOP typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
EntityCOPs typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
EntityOP typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
EntityRandomizerOP typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
evaluate_fitnesses()	protocols::genetic_algorithm::GeneticAlgorithm	virtual
evolve_next_generation()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
fill_by_crossover(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
fill_by_mutation(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
fill_with_perturbations_of_existing_entities(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
fill_with_random_entities(core::Size size=0)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
fitness_function_	protocols::genetic_algorithm::GeneticAlgorithm
FitnessFunctionOP typedef	protocols::genetic_algorithm::GeneticAlgorithm
fraction_by_recombination() const	protocols::genetic_algorithm::GeneticAlgorithmBase	inline
generations() const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
generations_checkpoint_filename(std::string suffix="") const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
GeneticAlgorithm()	protocols::genetic_algorithm::GeneticAlgorithm
GeneticAlgorithmBase()	protocols::genetic_algorithm::GeneticAlgorithmBase
max_generations() const	protocols::genetic_algorithm::GeneticAlgorithmBase	inline
max_population_size() const	protocols::genetic_algorithm::GeneticAlgorithmBase	inline
new_entity()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
number_to_propagate() const	protocols::genetic_algorithm::GeneticAlgorithmBase	inline
pop_const_const_iter typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
pop_const_iter typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
pop_iter typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
population(core::Size gen_num) const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
print_cache(std::ostream &) const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
print_generation_statistics(std::ostream &os, core::Size gen_num) const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
print_population(std::ostream &) const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
propagate_best_from_previous_generation(core::Size size=1, bool unique=true)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
read_checkpoint()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
read_entities_checkpoint(bool overwrite=false)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
read_generations_checkpoint()	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
rename_checkpoint_files() const	protocols::genetic_algorithm::GeneticAlgorithmBase
set_checkpoint_gzip(bool b)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_checkpoint_prefix(std::string const &p)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_checkpoint_rename(bool b)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_checkpoint_write_interval(core::Size i)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_entity_template(EntityCOP entity)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
set_frac_by_recomb(core::Real f)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_func(FitnessFunctionOP f)	protocols::genetic_algorithm::GeneticAlgorithm	virtual
set_max_generations(core::Size s)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
set_max_pop_size(core::Size s)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_num_to_propagate(core::Size s)	protocols::genetic_algorithm::GeneticAlgorithmBase	inlinevirtual
set_rand(EntityRandomizerOP r)	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
tournament_select(utility::vector1< EntityCOP > const &pvec) const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
TraitEntityHashMap typedef	protocols::genetic_algorithm::GeneticAlgorithmBase
write_entities_checkpoint() const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
write_generations_checkpoint() const	protocols::genetic_algorithm::GeneticAlgorithmBase	virtual
~GeneticAlgorithm() override	protocols::genetic_algorithm::GeneticAlgorithm
~GeneticAlgorithmBase() override	protocols::genetic_algorithm::GeneticAlgorithmBase