| add_termini_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| ambiguous_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| angle1_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| angle1_func_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| angle2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| angle2_func_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| angle_assigned_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| apply(Pose &) override | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| atom1_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom1_angle2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom1_angle_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom1_dist_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom1_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom2_angle2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom2_angle_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom2_dist_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom2_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom3_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom4_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom_center2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| atom_center_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| bond_assigned_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| center_angle_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const override | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| counter_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| create() | protocols::moves::Mover | virtual |
| cst_func_angle2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| cst_func_angle_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| cst_func_dist_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| cst_func_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| distance_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| distance_assigned_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| distance_func_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| fresh_instance() const override | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_all(core::select::residue_selector::ResidueSubset, core::pose::Pose const &) | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const override | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_self_ptr() const | protocols::moves::Mover | inline |
| get_self_ptr() | protocols::moves::Mover | inline |
| get_self_weak_ptr() const | protocols::moves::Mover | inline |
| get_self_weak_ptr() | protocols::moves::Mover | inline |
| get_type() const | protocols::moves::Mover | inline |
| get_values() | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| mover_name() | protocols::cyclic_peptide::PeptideCyclizeMover | static |
| name() | protocols::moves::Mover | inlinestatic |
| parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) override | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| PeptideCyclizeMover() | protocols::cyclic_peptide::PeptideCyclizeMover | |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| provide_citation_info(basic::citation_manager::CitationCollectionList &) const | protocols::moves::Mover | virtual |
| provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd) | protocols::cyclic_peptide::PeptideCyclizeMover | static |
| rebuild_fold_tree_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| res1_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_angle_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_angle_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_bond_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_dist_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_dist_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_tor_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res1_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_angle_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_angle_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_bond_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_dist_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_dist_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_tor_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res2_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res3_tor_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res3_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res4_tor_selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res4_torsion_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res_center2_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| res_center_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| reset_status() | protocols::moves::Mover | |
| selector_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| set_angle(core::Size, std::string, core::Size, std::string, core::Size, std::string, std::string) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_angle(core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, std::string) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_bond(core::Size, std::string, core::Size, std::string, bool, bool) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_bond(core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, bool, bool) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inlinevirtual |
| set_default() | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_distance(core::Size, std::string, core::Size, std::string, std::string) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_distance(core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, std::string) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_selector(core::select::residue_selector::ResidueSelectorCOP) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_torsion(core::Size, std::string, core::Size, std::string, core::Size, std::string, core::Size, std::string, std::string) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_torsion(core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, core::select::residue_selector::ResidueSelectorCOP, std::string, std::string) | protocols::cyclic_peptide::PeptideCyclizeMover | virtual |
| set_type(std::string const &setting) | protocols::moves::Mover | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| torsion_assigned_ | protocols::cyclic_peptide::PeptideCyclizeMover | private |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| type() const | protocols::moves::Mover | inline |
| ~PeptideCyclizeMover() override | protocols::cyclic_peptide::PeptideCyclizeMover | |
1.8.7