#include <KCluster.hh>

Inheritance diagram for protocols::toolbox::KClusterElement:

Public Types
typedef utility::vector1 < core::Size >	ClusterNdxList

typedef utility::vector1 < core::Size >	ClusterTypList

typedef utility::vector1 < core::Real >	ClusterDisList

Public Member Functions
	~KClusterElement () override
	Automatically generated virtual destructor for class deriving directly from VirtualBase. More...

	KClusterElement ()

	KClusterElement (core::Size nd)

void	assign_type_data (core::Size, core::Size, core::Real)
	assign a data into a cluster More...

void	add_new_data (core::Size ndx_data)
	add a new struture ndx to the data_ndx_ More...

void	add_new_cluster (core::Size ndx_data)
	add a new cluster center's data_ndx More...

void	set_cluster (core::Size ndx_cluster, core::Size ndx_data)
	set a cluster center's data_ndx More...

core::Size	get_type (core::Size ndx_data) const
	return data's type(local cluster index) More...

core::Real	get_distance (core::Size ndx_data) const
	return distance between data and center More...

core::Size	get_center_ndx (core::Size ndx_cluster) const
	return cluster center's data_ndx More...

const utility::vector1 < core::Size > &	get_ndx_list () const
	return the data ndx list of this cluster More...

const utility::vector1 < core::Size > &	get_ndx_list (core::Size c) const
	return the ndx list of sub-cluster More...

KClusterElementOP	get_subcluster (core::Size nc) const
	return the subcluster More...

core::Size	ncluster ()

core::Size	get_cur_ncluster () const
	return current cluster number More...

core::Size	get_ndata () const
	return current data number More...

core::Size	get_data_ndx (core::Size ndx_data) const
	return current data number More...

core::Real	get_max_distance () const

core::Size	get_max_dist_ndx () const

void	clear_data ()
	clean the data list More...

void	clear ()
	clean the subcluster's list, open edit mode More...

void	check ()
	check the list, close edit mode More...

Private Attributes
ClusterNdxList	data_ndx_

ClusterTypList	type_list_

ClusterDisList	dist_list_

ClusterNdxList	center_ndx_

utility::vector1 < KClusterElementOP >	subclusters_

core::Real	max_distance_

core::Size	max_dist_ndx_

bool	edit_mode

Member Typedef Documentation

typedef utility::vector1< core::Real > protocols::toolbox::KClusterElement::ClusterDisList

typedef utility::vector1< core::Size > protocols::toolbox::KClusterElement::ClusterNdxList

typedef utility::vector1< core::Size > protocols::toolbox::KClusterElement::ClusterTypList

Constructor & Destructor Documentation

protocols::toolbox::KClusterElement::~KClusterElement ( )

overridedefault

Automatically generated virtual destructor for class deriving directly from VirtualBase.

Auto-generated virtual destructor

protocols::toolbox::KClusterElement::KClusterElement ( )

inline

Referenced by add_new_cluster().

protocols::toolbox::KClusterElement::KClusterElement ( core::Size nd )

inline

References data_ndx_.

Member Function Documentation

void protocols::toolbox::KClusterElement::add_new_cluster ( core::Size ndx_data )

inline

add a new cluster center's data_ndx

References center_ndx_, KClusterElement(), and subclusters_.

void protocols::toolbox::KClusterElement::add_new_data ( core::Size ndx_data )

inline

add a new struture ndx to the data_ndx_

References data_ndx_, dist_list_, and type_list_.

void protocols::toolbox::KClusterElement::assign_type_data	(	core::Size	ndx_data,
		core::Size	ndx_cluster,
		core::Real	d
	)

assign a data into a cluster

void protocols::toolbox::KClusterElement::check ( )

inline

check the list, close edit mode

References edit_mode.

void protocols::toolbox::KClusterElement::clear ( )

inline

clean the subcluster's list, open edit mode

References edit_mode, max_dist_ndx_, max_distance_, and subclusters_.

void protocols::toolbox::KClusterElement::clear_data ( )

inline

clean the data list

References data_ndx_, dist_list_, and type_list_.

core::Size protocols::toolbox::KClusterElement::get_center_ndx ( core::Size ndx_cluster ) const

inline

return cluster center's data_ndx

References center_ndx_.

core::Size protocols::toolbox::KClusterElement::get_cur_ncluster ( ) const

inline

return current cluster number

References subclusters_.

core::Size protocols::toolbox::KClusterElement::get_data_ndx ( core::Size ndx_data ) const

inline

return current data number

References data_ndx_.

core::Real protocols::toolbox::KClusterElement::get_distance ( core::Size ndx_data ) const

inline

return distance between data and center

References dist_list_.

core::Size protocols::toolbox::KClusterElement::get_max_dist_ndx ( ) const

inline

References max_dist_ndx_.

core::Real protocols::toolbox::KClusterElement::get_max_distance ( ) const

inline

References max_distance_.

core::Size protocols::toolbox::KClusterElement::get_ndata ( ) const

inline

return current data number

References data_ndx_.

const utility::vector1<core::Size>& protocols::toolbox::KClusterElement::get_ndx_list ( ) const

inline

return the data ndx list of this cluster

References data_ndx_.

const utility::vector1<core::Size>& protocols::toolbox::KClusterElement::get_ndx_list ( core::Size c ) const

inline

return the ndx list of sub-cluster

References core::pack::dunbrack::c, and subclusters_.

KClusterElementOP protocols::toolbox::KClusterElement::get_subcluster ( core::Size nc ) const

inline

return the subcluster

References subclusters_.

core::Size protocols::toolbox::KClusterElement::get_type ( core::Size ndx_data ) const

inline

return data's type(local cluster index)

References type_list_.

core::Size protocols::toolbox::KClusterElement::ncluster ( )

inline

References center_ndx_.

void protocols::toolbox::KClusterElement::set_cluster	(	core::Size	ndx_cluster,
		core::Size	ndx_data
	)

inline

set a cluster center's data_ndx

References center_ndx_.

Member Data Documentation

ClusterNdxList protocols::toolbox::KClusterElement::center_ndx_

private

Referenced by add_new_cluster(), get_center_ndx(), ncluster(), and set_cluster().

ClusterNdxList protocols::toolbox::KClusterElement::data_ndx_

private

Referenced by add_new_data(), clear_data(), get_data_ndx(), get_ndata(), get_ndx_list(), and KClusterElement().

ClusterDisList protocols::toolbox::KClusterElement::dist_list_

private

Referenced by add_new_data(), clear_data(), and get_distance().

bool protocols::toolbox::KClusterElement::edit_mode

private

Referenced by check(), and clear().

core::Size protocols::toolbox::KClusterElement::max_dist_ndx_

private

Referenced by clear(), and get_max_dist_ndx().

core::Real protocols::toolbox::KClusterElement::max_distance_

private

Referenced by clear(), and get_max_distance().

utility::vector1< KClusterElementOP > protocols::toolbox::KClusterElement::subclusters_

private

Referenced by add_new_cluster(), clear(), get_cur_ncluster(), get_ndx_list(), and get_subcluster().

ClusterTypList protocols::toolbox::KClusterElement::type_list_

private

Referenced by add_new_data(), clear_data(), and get_type().

The documentation for this class was generated from the following files:

src/protocols/toolbox/KCluster.hh
src/protocols/toolbox/KCluster.cc

Public Types

Public Member Functions

Private Attributes

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation