AlignmentFileGeneratorMover.cc File Reference

Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover. More...

#include <protocols/sewing/hashing/AlignmentFileGeneratorMover.hh>
#include <protocols/sewing/hashing/AlignmentFileGeneratorMoverCreator.hh>
#include <protocols/sewing/hashing/AlignmentGenerator.hh>
#include <protocols/sewing/hashing/Hasher.hh>
#include <protocols/sewing/hashing/EdgeMapGenerator.hh>
#include <protocols/sewing/hashing/BasisMapGenerator.hh>
#include <protocols/sewing/hashing/LigandBindingResPlacer.hh>
#include <protocols/sewing/data_storage/SmartSegment.hh>
#include <protocols/sewing/data_storage/LigandSegment.hh>
#include <protocols/sewing/data_storage/SmartSewingResidue.hh>
#include <protocols/sewing/data_storage/LigandResidue.hh>
#include <protocols/sewing/movers/AssemblyMover.hh>
#include <protocols/moves/mover_schemas.hh>
#include <core/util/metalloproteins_util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/BondedResidueSelector.hh>
#include <core/pose/Pose.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/selection.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/AtomTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/id/AtomID.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/sewing.OptionKeys.gen.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <utility/io/util.hh>
#include <utility/io/ozstream.hh>
#include <utility/io/izstream.hh>
#include <utility/string_util.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::sewing
	protocols::sewing::hashing

Functions
static basic::Tracer	TR ("protocols.sewing.AlignmentFileGeneratorMover")
std::ostream &	protocols::sewing::hashing::operator<< (std::ostream &os, AlignmentFileGeneratorMover const &mover)

Detailed Description

Given a model file, edge file ,and one or more input structures, generates alignment files for use with AppendAssemblyMover.

Author

guffysl (guffy.nosp@m.@ema.nosp@m.il.un.nosp@m.c.ed.nosp@m.u)

minniel (minni.nosp@m.e@em.nosp@m.ail.u.nosp@m.nc.e.nosp@m.du)

Function Documentation

static basic::Tracer TR ( "protocols.sewing.AlignmentFileGeneratorMover"  )

static