| dist_pair(Vector const &a1, Vector const &a2, Vector const &a3, Vector const &a4, Real &dist, Vector &cen1, Vector &cen2, Vector &v21) | core::scoring::SecondaryStructurePotential | privatestatic |
| ds_ | core::scoring::SecondaryStructurePotential | private |
| FArray1_real typedef | core::scoring::SecondaryStructurePotential | |
| FArray1A_real typedef | core::scoring::SecondaryStructurePotential | |
| FArray1D_int typedef | core::scoring::SecondaryStructurePotential | |
| FArray1D_real typedef | core::scoring::SecondaryStructurePotential | |
| FArray2D_real typedef | core::scoring::SecondaryStructurePotential | |
| FArray4D_real typedef | core::scoring::SecondaryStructurePotential | |
| get_foldtree_seqsep(pose::Pose const &pose, int pos1, int pos2, int gap_size=10) const | core::scoring::SecondaryStructurePotential | private |
| hairpin_killing_score(pose::Pose const &pose, Size const &pos1, Size const &pos2, Real const &theta, float const &ss_score) const | core::scoring::SecondaryStructurePotential | private |
| helix_end(int const &pos1, BB_Pos const &bb_pos, Vector &p1, Vector &p2) const | core::scoring::SecondaryStructurePotential | private |
| hs_dp_ | core::scoring::SecondaryStructurePotential | private |
| hs_dp_initializer(FArray1D_real &hs_dp) | core::scoring::SecondaryStructurePotential | privatestatic |
| hspair(pose::Pose const &pose, Real &hs_score) const | core::scoring::SecondaryStructurePotential | private |
| identify_ss(pose::Pose const &pose, Helices &helices, Strands &strands) const | core::scoring::SecondaryStructurePotential | private |
| ids_ | core::scoring::SecondaryStructurePotential | private |
| ids_initializer(FArray1D_int &ids) | core::scoring::SecondaryStructurePotential | privatestatic |
| idsn_ | core::scoring::SecondaryStructurePotential | private |
| idsn_initializer(FArray1D_int &idsn) | core::scoring::SecondaryStructurePotential | privatestatic |
| iptsn_ | core::scoring::SecondaryStructurePotential | private |
| load_phi_theta_bins(std::string const &hs_filename="scoring/score_functions/SecondaryStructurePotential/phi.theta.36.HS.resmooth", std::string const &ss_filename="scoring/score_functions/SecondaryStructurePotential/phi.theta.36.SS.resmooth") | core::scoring::SecondaryStructurePotential | private |
| m_term_ | core::scoring::SecondaryStructurePotential | private |
| m_term_initializer(FArray1D_real &m_term) | core::scoring::SecondaryStructurePotential | privatestatic |
| pair_dp(int const &ss1, int const &ss2, BB_Pos const &bb_pos, Real &dp, Vector const &vdist, int &sign1, int &sign2) const | core::scoring::SecondaryStructurePotential | private |
| pts_ | core::scoring::SecondaryStructurePotential | private |
| rsigma_dot_ | core::scoring::SecondaryStructurePotential | private |
| rsigma_dot_initializer(FArray4D_real &rsigma_dot) | core::scoring::SecondaryStructurePotential | static |
| score(pose::Pose const &pose, SecondaryStructureWeights const &weights, Real &hs_score, Real &ss_score, Real &rsigma_score, Real &sheet_score) const | core::scoring::SecondaryStructurePotential | |
| SecondaryStructurePotential() | core::scoring::SecondaryStructurePotential | |
| setup_for_scoring(pose::Pose &pose) const | core::scoring::SecondaryStructurePotential | |
| sheets_from_dimers(pose::Pose const &pose) const | core::scoring::SecondaryStructurePotential | private |
| sigma(Vector const &a2, Vector const &cen1, Vector const &v21, Real &sig) | core::scoring::SecondaryStructurePotential | privatestatic |
| spherical(Vector const &a2, Vector const &a4, Real &phi, Real &theta, Vector const &cen1, Vector const &cen2, Vector const &v21) | core::scoring::SecondaryStructurePotential | privatestatic |
| ss_penalty_initializer(FArray1D_real &SS_penalty) | core::scoring::SecondaryStructurePotential | privatestatic |
| ssdist_ | core::scoring::SecondaryStructurePotential | private |
| ssdist_initializer(FArray2D_real &ssdist) | core::scoring::SecondaryStructurePotential | privatestatic |
| sspair(pose::Pose const &pose, SecondaryStructureWeights const &weights, Real &ss_score, Real &rsigma_score) const | core::scoring::SecondaryStructurePotential | private |
| SymmetricConformation typedef | core::scoring::SecondaryStructurePotential | |
| SymmetryInfoCOP typedef | core::scoring::SecondaryStructurePotential | |
| ~SecondaryStructurePotential() override=default | core::scoring::SecondaryStructurePotential | inline |
1.8.7