MHCEpitopePredictorMatrix.cc File Reference

MHC epitope predictor using a position weight matrix, targeted to Propred though in theory generalizable to others. More...

#include <core/types.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <utility/file/FileName.hh>
#include <basic/database/open.hh>
#include <iostream>
#include <string>
#include <utility/string_util.hh>
#include <core/chemical/AA.hh>
#include <core/scoring/mhc_epitope_energy/MHCEpitopePredictorMatrix.hh>
#include <core/scoring/ScoringManager.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::scoring
	core::scoring::mhc_epitope_energy

Functions
static basic::Tracer	core::scoring::mhc_epitope_energy::TR ("core.scoring.mhc_epitope_energy.MHCEpitopePredictorMatrix")
std::string	core::scoring::mhc_epitope_energy::get_useful_line (std::list< std::string > &matrix)
	Gets the next line that is not blank and not commented out by a #. More...

Detailed Description

MHC epitope predictor using a position weight matrix, targeted to Propred though in theory generalizable to others.

Author

Chris Bailey-Kellogg, cbk@c.nosp@m.s.da.nosp@m.rtmou.nosp@m.th.e.nosp@m.du; Brahm Yachnin, brahm.nosp@m..yac.nosp@m.hnin@.nosp@m.rutg.nosp@m.ers.e.nosp@m.du