protocols::frag_picker::SidechainContactDistCutoff Class Reference

defines sidechain contact distance cutoffs. More...

#include <SidechainContactDistCutoff.hh>

Inheritance diagram for protocols::frag_picker::SidechainContactDistCutoff:

Public Member Functions
	SidechainContactDistCutoff ()
	SidechainContactDistCutoff (core::Real scale_factor)
	~SidechainContactDistCutoff () override
core::Real	get_cutoff (char aa_i, char aa_j)
core::Real	get_cutoff_squared (char aa_i, char aa_j)
core::Real	scale_factor ()

Private Member Functions
void	initialize ()

Private Attributes
utility::vector1< char >	aa_map_
std::map< char, core::Size >	aa_to_index_map_
utility::vector1 < utility::vector1< core::Real > >	cutoff_
utility::vector1 < utility::vector1< core::Real > >	cutoff_squared_
core::Real	scale_factor_

Detailed Description

defines sidechain contact distance cutoffs.

provides amino acid pair specific distance cutoffs.

Constructor & Destructor Documentation

protocols::frag_picker::SidechainContactDistCutoff::SidechainContactDistCutoff

(

)

protocols::frag_picker::SidechainContactDistCutoff::SidechainContactDistCutoff

(

core::Real

scale_factor

)

References initialize(), scale_factor(), and scale_factor_.

protocols::frag_picker::SidechainContactDistCutoff::~SidechainContactDistCutoff ( )

overridedefault

Member Function Documentation

core::Real protocols::frag_picker::SidechainContactDistCutoff::get_cutoff	(	char	aa_i,
		char	aa_j
	)

References aa_to_index_map_, and cutoff_.

core::Real protocols::frag_picker::SidechainContactDistCutoff::get_cutoff_squared	(	char	aa_i,
		char	aa_j
	)

References aa_to_index_map_, and cutoff_squared_.

void protocols::frag_picker::SidechainContactDistCutoff::initialize ( )

private

References core::chemical::aa_from_name(), aa_map_, aa_to_index_map_, cutoff_, cutoff_squared_, core::chemical::oneletter_code_from_aa(), scale_factor_, and protocols::frag_picker::TR().

Referenced by SidechainContactDistCutoff().

core::Real protocols::frag_picker::SidechainContactDistCutoff::scale_factor

(

)

References scale_factor_.

Referenced by SidechainContactDistCutoff().

Member Data Documentation

utility::vector1<char> protocols::frag_picker::SidechainContactDistCutoff::aa_map_

private

Referenced by initialize().

std::map<char,core::Size> protocols::frag_picker::SidechainContactDistCutoff::aa_to_index_map_

private

Referenced by get_cutoff(), get_cutoff_squared(), and initialize().

utility::vector1<utility::vector1<core::Real> > protocols::frag_picker::SidechainContactDistCutoff::cutoff_

private

Referenced by get_cutoff(), and initialize().

utility::vector1<utility::vector1<core::Real> > protocols::frag_picker::SidechainContactDistCutoff::cutoff_squared_

private

Referenced by get_cutoff_squared(), and initialize().

core::Real protocols::frag_picker::SidechainContactDistCutoff::scale_factor_

private

Referenced by initialize(), scale_factor(), and SidechainContactDistCutoff().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/SidechainContactDistCutoff.hh
• src/protocols/frag_picker/SidechainContactDistCutoff.cc