| assignments() const | protocols::noesy_assign::CrossPeakList | inline |
| assignments() | protocols::noesy_assign::CrossPeakList | inline |
| assignments_ | protocols::noesy_assign::CrossPeakList | private |
| begin() const | protocols::noesy_assign::CrossPeakList | inline |
| begin() | protocols::noesy_assign::CrossPeakList | inline |
| calibrate(DecoyIterator const &begin, DecoyIterator const &end) | protocols::noesy_assign::CrossPeakList | |
| calibrate(PeakCalibrator const &calibrator) | protocols::noesy_assign::CrossPeakList | private |
| const_iterator typedef | protocols::noesy_assign::CrossPeakList | |
| count_assignments() const | protocols::noesy_assign::CrossPeakList | |
| CrossPeakList() | protocols::noesy_assign::CrossPeakList | |
| CrossPeaks typedef | protocols::noesy_assign::CrossPeakList | |
| delete_diagonal_peaks() | protocols::noesy_assign::CrossPeakList | |
| eliminate_spurious_peaks() | protocols::noesy_assign::CrossPeakList | |
| end() const | protocols::noesy_assign::CrossPeakList | inline |
| end() | protocols::noesy_assign::CrossPeakList | inline |
| find_assignments() | protocols::noesy_assign::CrossPeakList | |
| generate_fa_and_cen_constraints(core::scoring::constraints::ConstraintSetOP fa_set, core::scoring::constraints::ConstraintSetOP cen_set, core::pose::Pose const &pose, core::pose::Pose const ¢roid_pose, core::Size min_seq_separation, core::Size min_quali, core::Size max_quali, core::Real padding=0.0, bool ignore_elimination_candidates=true, bool elimination_candidates=false) const | protocols::noesy_assign::CrossPeakList | |
| iterator typedef | protocols::noesy_assign::CrossPeakList | |
| network_analysis() | protocols::noesy_assign::CrossPeakList | |
| peaks() const | protocols::noesy_assign::CrossPeakList | inline |
| peaks_ | protocols::noesy_assign::CrossPeakList | private |
| read_from_stream(std::istream &, PeakFileFormat &input_adaptor, ResonanceListOP resonances) | protocols::noesy_assign::CrossPeakList | |
| set_trivial_decoy_compatibility_score() | protocols::noesy_assign::CrossPeakList | |
| size() const | protocols::noesy_assign::CrossPeakList | inline |
| update_assignment_list() | protocols::noesy_assign::CrossPeakList | private |
| update_chemshiftscore() | protocols::noesy_assign::CrossPeakList | |
| update_decoy_compatibility_score(DecoyIterator const &begin, DecoyIterator const &end) | protocols::noesy_assign::CrossPeakList | |
| update_peak_volumina() | protocols::noesy_assign::CrossPeakList | |
| update_symmetry_score() | protocols::noesy_assign::CrossPeakList | |
| update_upperdistance_score() | protocols::noesy_assign::CrossPeakList | |
| write_peak_files(std::string const &prefix, PeakFileFormat &output_adaptor) const | protocols::noesy_assign::CrossPeakList | |
| write_to_stream(std::ostream &, PeakFileFormat &output_adaptor) const | protocols::noesy_assign::CrossPeakList | |
| ~CrossPeakList() override | protocols::noesy_assign::CrossPeakList | |